View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232R-Insertion-6 (Length: 495)
Name: NF2232R-Insertion-6
Description: NF2232R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232R-Insertion-6 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 259 - 495
Target Start/End: Original strand, 37261132 - 37261368
Alignment:
| Q |
259 |
attcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtcttgcctatgctgcagatgcaccagcacctattgaagatgacggcgatga |
358 |
Q |
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| T |
37261132 |
attcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtcttgcctatgctgcagatgcaccagcacctattgaagatgacggcgatga |
37261231 |
T |
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| Q |
359 |
atatcttgttggaactagaagcggggatcctccttcagcaggcggtattgtggcgggacccattggtggacccgtgcctcctggtgccttcgatagcact |
458 |
Q |
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| T |
37261232 |
atatcttgttggaactagaagcggggatcctccttcagcaggcggtattgtggcgggacccattggtggacccgtgcctcctggtgccttcgatagtact |
37261331 |
T |
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| Q |
459 |
gcgcccgcacctaatgccgcctctaccgtctacttct |
495 |
Q |
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| T |
37261332 |
gcgcccgcacctaatgccgcctctaccgtctacttct |
37261368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 250 - 495
Target Start/End: Original strand, 37264896 - 37265141
Alignment:
| Q |
250 |
tcatggcacattcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtcttgcctatgctgcagatgcaccagcacctattgaagatga |
349 |
Q |
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| T |
37264896 |
tcatggcacattcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtctcgcctatgctgcagatgcaccagcacctattgaagatga |
37264995 |
T |
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| Q |
350 |
cggcgatgaatatcttgttggaactagaagcggggatcctccttcagcaggcggtattgtggcgggacccattggtggacccgtgcctcctggtgccttc |
449 |
Q |
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| T |
37264996 |
cggcgatgaatatcttgttggaactagaagtggggatcctccttcagcaggtggtattgtggcgggacccattggtggacccgtgcctccgggtgccttc |
37265095 |
T |
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| Q |
450 |
gatagcactgcgcccgcacctaatgccgcctctaccgtctacttct |
495 |
Q |
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| T |
37265096 |
gatggtactgcgcccgcacctaatgccgcctctaccgtctacttct |
37265141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 250 - 495
Target Start/End: Original strand, 37280695 - 37280943
Alignment:
| Q |
250 |
tcatggcacattcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtcttgcctatgctgcagatgcaccagcacctattgaagatga |
349 |
Q |
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| T |
37280695 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgctgcagatgcaccagcacctattgaagatga |
37280794 |
T |
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| Q |
350 |
cggcgatgaatatcttgttggaactagaagcggggatcctccttcagca---ggcggtattgtggcgggacccattggtggacccgtgcctcctggtgcc |
446 |
Q |
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| T |
37280795 |
cggcgatgaatatcttgttggaactagaagcggggatcctccttcagcaagtggcggtattgtggcgggaccccttggtggacctgtgcctccaggtgcc |
37280894 |
T |
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| Q |
447 |
ttcgatagcactgcgcccgcacctaatgccgcctctaccgtctacttct |
495 |
Q |
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|| ||| ||||||||| |||||| ||||||||||| | ||||||||| |
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| T |
37280895 |
tttgatgctactgcgcccccacctagtgccgcctctagcatctacttct |
37280943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 37264656 - 37264836
Alignment:
| Q |
9 |
ccattatcatattatcttcatgttattgagatcacaaggttataaaatatttttgaaatttcaaataaccaatggctttcctcacacttcggattattac |
108 |
Q |
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| T |
37264656 |
ccattatcatattatcttcatgttattgagatcacaaggtaataaaatatttttggaatttcaaataaccatcggctttcctcacacttcggattattac |
37264755 |
T |
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| Q |
109 |
tataaaatgtatgcacatcatcaacccttttcccacgactactccaacccataaacaaaatccaccaacattcctttataa |
189 |
Q |
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| T |
37264756 |
tataaaatgtatgtacatcatcaacctttttcctacgactactccaacccacaaacaaaatccaccaacattcctttataa |
37264836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 250 - 491
Target Start/End: Original strand, 37276846 - 37277105
Alignment:
| Q |
250 |
tcatggcacattcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtcttgcctatgctgcagatgcaccagcacctattga------ |
343 |
Q |
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| T |
37276846 |
tcatggcacattcaaggcatgttgttattctagcccttgtaatgttagccatgattggccttgcctatgctgcagatgcaccagcacctgctgagagtga |
37276945 |
T |
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| Q |
344 |
------agatgacggcgatgaatatcttgttggaactagaagcggggatcctccttcagcaggcgg------tattgtggcgggacccattggtggaccc |
431 |
Q |
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||| || | ||| |||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||| |||||| |
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| T |
37276946 |
ctttctagaagatgacgacgaatatcttgttggaactagaaagggggatcctccttcagcaaacggcatcaatattgtggcgggaccaattggaggaccc |
37277045 |
T |
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| Q |
432 |
gtgcctcctggtgccttcgatagcactgcgcccgcacctaatgccgcctctaccgtctac |
491 |
Q |
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| T |
37277046 |
gtgcatgcaggtacctttgataatattgcacccgcacctagtgccgcctctaccatctac |
37277105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 37264357 - 37264427
Alignment:
| Q |
9 |
ccattatcatattatcttcatgttattgagatcacaaggttataaaatatttttgaaatttcaaataacca |
79 |
Q |
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||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| |||||||||| |||| |
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| T |
37264357 |
ccattatcatattatcttcatgttattgaaatcacatggttctaaaatatttttgtaatttcaaatgacca |
37264427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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