View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2232R-Insertion-7 (Length: 400)

Name: NF2232R-Insertion-7
Description: NF2232R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2232R-Insertion-7
NF2232R-Insertion-7
[»] chr1 (1 HSPs)
chr1 (8-400)||(51909293-51909686)


Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Original strand, 51909293 - 51909686
Alignment:
Q  8 atcaaacatgggtaggactatctttacttcaaatataacatgtaaaaataaaaatcaatacattattattcaaa-taatattgaattgtgaataaattga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51909293 atcaaacatgggtaggactatctttacttcaaatataacatgtaaaaataaaaatcaatacattattattcaaaataatattgaattgtgaataaattga 51909392  T
Q  107 actaaacaataagcattgtgctgctctagctggaaatgaaagataattaatataggtggagcctaatctatctcgtgtaacaatggtcataaggcatgaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51909393 actaaacaataagcattgtgctgctctagctggaaatgaaagataattaatataggtggagcctaatctatctcgtgtaacaatggtcataaggcatgaa 51909492  T
Q  207 aatatattatagtttagtcagcatctcactgaccaattgtcccttatttctatcccttgcatggccccaaaggtttgccacataagcacaagttgtgggc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51909493 aatatattatagtttagtcagcatctcactgaccaattgtcccttatttctatcccttgcatggccccaaaggtttgccacataagcacaagttgtgggc 51909592  T
Q  307 ataagcaactggtggaaagatgttgaatggtctagtttgtggtatttctccacacagcctgtttgccctgaaacttgcatgctttagattagtt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51909593 ataagcaactggtggaaagatgttgaatggtctagtttgtggtatttctccacacagcctgtttgccctgaaacttgcatgctttagattagtt 51909686  T

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