View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232_high_11 (Length: 351)
Name: NF2232_high_11
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 43653879 - 43654207
Alignment:
| Q |
9 |
agcagagagcactgaaatgagctttgcattgagctcagaaccagatatggcatagctacaagctaatacacttgagttcattgcagccatgtgtaatgga |
108 |
Q |
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| T |
43653879 |
agcagagggcactgaaatgagctttgcattgagctcagaaccagatatggcatagctacaagctaatacacttgagttcattgcagccatgtgtaatgga |
43653978 |
T |
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| Q |
109 |
ttgctagtttagttctgctgatcgatctgtgatgtgtatcagagtccaaaggaaataaaaattaagtcaacttatgttgcaaggaacaaagggtgtaatc |
208 |
Q |
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| T |
43653979 |
ttgctagtttagttctgctgatcgatctgtgatgtgtatcagagtccaaaggaaataaaaattaagtcaacttatgttgcaaggaacaaagggtgtaatc |
43654078 |
T |
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| Q |
209 |
aaagattgtggttggcgtgtggataaggtgagattgcattgatttcctattggcaaatcttgttctctttgatgtatttggggcatttcagtccacatac |
308 |
Q |
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| T |
43654079 |
aaagattgtggttggcgtgtggataaggtgagattgcattgatttcctattggcaaatcttgttctctttgatgtatttggggcatttcagtccacatag |
43654178 |
T |
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| Q |
309 |
ttcaaatagtttaggacccactacaattt |
337 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43654179 |
ttcaaatagtttaggacccactacaattt |
43654207 |
T |
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