View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232_high_2 (Length: 485)
Name: NF2232_high_2
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 37 - 474
Target Start/End: Complemental strand, 41127589 - 41127143
Alignment:
| Q |
37 |
tctacctaaagatatatgagacatgcaactcactcttcaatttcattatcctaccaattcaccatctactcacacaattgatatgcaagcaatcacat-c |
135 |
Q |
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| T |
41127589 |
tctacctaaagatatatgagacatgcaactcactcttcaatttcattctcctaccaattcaccatctactcacacaattgatatgcaagcaatcacataa |
41127490 |
T |
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| Q |
136 |
aaaaacaaatgaacaagattccttatgatcaaaattgtaaaatgagtagagtatgataattcaaatgtacaattaatctactcataa------acatata |
229 |
Q |
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| T |
41127489 |
aaaaacaaatgaacaagagtccttatg-tcaaaattgtaaaatgagtagagtatgataattcaaatgtacaattaatctactcataaacatatacatata |
41127391 |
T |
|
| Q |
230 |
acatattgtcttaatgttggtaaaacaacacattatggtaatgcatgccaatgttatactatttcatggtatggattcaacaaacttagaactgataggg |
329 |
Q |
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| T |
41127390 |
acatattgtcttaatgttggtaaaacaacacattatggtaatgcatgccaatgttatactatttcatggtatggattcaacaaacttagaactgataggg |
41127291 |
T |
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| Q |
330 |
gaagaaaagtcatttgttacc----aactggtaatgtatcgtaagagtgatttaattatcaactggaacgtcttaacaactcacttttacacaagatatt |
425 |
Q |
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||||||||||||||||||||| || | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41127290 |
gaagaaaagtcatttgttaccaaataaattgaagagtatcgtaagagtgatttaattatcaactggaacgtcttaacaactcacttttacacaagatatt |
41127191 |
T |
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| Q |
426 |
cacaccaatgccacgccctaagcttcctcgatcttctactttgattctt |
474 |
Q |
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| T |
41127190 |
cacaccaatgccacggcctaagcttcctcgatcttcta-tttgattctt |
41127143 |
T |
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