View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232_high_21 (Length: 245)
Name: NF2232_high_21
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232_high_21 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42281305 - 42281072
Alignment:
| Q |
1 |
cgatacaattcttcctaggatatagattataggatattgagacactaattgtcttcaccccattgattaaaatatnnnnnnnnnn-ttgctaactatttt |
99 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
42281305 |
cgatacaattcttcctaggatatag-------gatattgagacactaattgtcttcatcccattgattaaaatataaaaaaaaaaattgctaactatttt |
42281213 |
T |
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| Q |
100 |
tattcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatttaagta |
199 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42281212 |
tattcttatcctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagatatacatttaagta |
42281113 |
T |
|
| Q |
200 |
ttgaatctgctaggtctcttgatcaatctcttaggcctttg |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
42281112 |
ttgaatctgctaggtctcttgatcaatctcttaggcctttg |
42281072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42254944 - 42254712
Alignment:
| Q |
1 |
cgatacaattcttcctaggatatagattataggatattgagacactaattgtcttcaccccattgattaaaatatnnnnnnnnnnttgctaactattttt |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
42254944 |
cgatacaattcttcctaggatatag-------gatattgagacactaattgtcttcatcccattgattaaaaatataaaagaaaattgctaactattttt |
42254852 |
T |
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| Q |
101 |
attcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatttaagtat |
200 |
Q |
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| T |
42254851 |
attcttatcctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgcttatagagatacatttaagtat |
42254752 |
T |
|
| Q |
201 |
tgaatctgctaggtctcttgatcaatctcttaggcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42254751 |
tgaatctgctaggtctcttgatcaatctcttaggcctttg |
42254712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 42269447 - 42269301
Alignment:
| Q |
94 |
tatttttattcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42269447 |
tatttttattcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgcttctagagatacatt |
42269348 |
T |
|
| Q |
194 |
taagtattgaatctgctaggtctcttgatcaatctcttaggcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42269347 |
taagtattgaatctgctaggtctcttgatcaatctcttgggcctttg |
42269301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42260463 - 42260240
Alignment:
| Q |
1 |
cgatacaattcttcctaggatatagattataggatattgagacactaattgtcttcaccccattgattaaaatatnnnnnnnnnnttgctaactattttt |
100 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| || |||| ||||||| |
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| T |
42260463 |
cgatacaattcttcctaggatatag-------gatattgagacactaattgtcttcgatccattgattaaaatataaaagaaaa-ttcctaattattttt |
42260372 |
T |
|
| Q |
101 |
attcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatttaagtat |
200 |
Q |
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|||||||| | ||||| |||||||| || | | | ||||||||||||||||||||| ||| |||||||| ||||| ||| ||| |||||| ||| |
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| T |
42260371 |
attcttatccattttctggtactaaagg------aca-acttgtatcagctcatggatttatcctattccttga-tgctaatagcaatatatttaattat |
42260280 |
T |
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| Q |
201 |
tgaatctgctaggtctcttgatcaatctcttaggcctttg |
240 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |
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| T |
42260279 |
tgaatctgctaggtctcttgatcaatctcttgggcctttg |
42260240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 42272620 - 42272573
Alignment:
| Q |
28 |
tataggatattgagacactaattgtcttcaccccattgattaaaatat |
75 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42272620 |
tataggatattgagacactaattgtcttcatcccattgattaaaatat |
42272573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 42285654 - 42285607
Alignment:
| Q |
28 |
tataggatattgagacactaattgtcttcaccccattgattaaaatat |
75 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42285654 |
tataggatattgagacactaattgtcttcatcccattgattaaaatat |
42285607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 489298 - 489075
Alignment:
| Q |
1 |
cgatacaattcttcctaggatatagattataggatattgagacactaattgtcttcaccccattgattaaaatatnnnnnnnnnnttgctaactattttt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| || |||| ||||||| |
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| T |
489298 |
cgatacaattcttcctaggatatag-------gatattgagacactaattgtcttcgatccattgattaaaatataaaagaaaa-ttcctaattattttt |
489207 |
T |
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| Q |
101 |
attcttatgctttttcaggtactaatggtactagagatatttgtatcagctcatggatttaccctcttccttgaatgctactagagatacatttaagtat |
200 |
Q |
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|||||||| | ||||| |||||||| || | | | ||||||||||||||||||||| ||| |||||||| ||||| ||| ||| |||||| ||| |
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| T |
489206 |
attcttatccattttctggtactaaagg------aca-acttgtatcagctcatggatttatcctattccttga-tgctaatagcaatatatttaattat |
489115 |
T |
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| Q |
201 |
tgaatctgctaggtctcttgatcaatctcttaggcctttg |
240 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |
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| T |
489114 |
tgaatctgctaggtctcttgatcaatctcttgggcctttg |
489075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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