View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2232_high_26 (Length: 208)
Name: NF2232_high_26
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232_high_26 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 4602733 - 4602913
Alignment:
| Q |
13 |
agcacagaagttaatatcttgaagattcatacacacacatatttataaagttactatacattcaatgaaagttatttgtagtataacaaattttagtttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4602733 |
agcacagaagttaatatcttgaagattcatacacacacatatttataaagttactatacattcaatgaaagttatttgtagtataacaaattttagtttt |
4602832 |
T |
|
| Q |
113 |
gaagttttatagaaatttgtgcaggtcatcttctcaatgacaatgagagcttttaatttgaggtttggattgttattaact |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4602833 |
gaagttttatagaaatttgtgcaggtcatcttctcaatgacaatgagagcttttaatttgaggtttggattgttattaact |
4602913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 419 - 588
Alignment:
| Q |
21 |
agttaatatcttgaagattcatacacacacatatttataaagttactatacattcaatgaaagttatttgt---agtataacaaattttagttttgaagt |
117 |
Q |
| |
|
|||||||| |||| || |||||||||||| |||| || | ||| ||||||||||||| ||||||||||| ||||||| |||||||||||| ||||| |
|
|
| T |
419 |
agttaatagcttgcaggttcatacacacatatata-atgtatttattatacattcaatgtaagttatttgttgaagtataataaattttagtttcgaagt |
517 |
T |
|
| Q |
118 |
tttatagaaatttgtgcaggtcatcttctcaatgacaatgagagcttttaatttgaggtttggattgttattaactg |
194 |
Q |
| |
|
| |||| ||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
518 |
tctataaaaatttgtgaaggtcgtcttct------caacgagagcttttaatttgagggttggattgttgttaactg |
588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 1675182 - 1675351
Alignment:
| Q |
21 |
agttaatatcttgaagattcatacacacacatatttataaagttactatacattcaatgaaagttatttgt---agtataacaaattttagttttgaagt |
117 |
Q |
| |
|
|||||||| |||| || |||||||||||| |||| || | ||| ||||||||||||| ||||||||||| ||||||| |||||||||||| ||||| |
|
|
| T |
1675182 |
agttaatagcttgcaggttcatacacacatatata-atgtatttattatacattcaatgtaagttatttgttgaagtataataaattttagtttcgaagt |
1675280 |
T |
|
| Q |
118 |
tttatagaaatttgtgcaggtcatcttctcaatgacaatgagagcttttaatttgaggtttggattgttattaactg |
194 |
Q |
| |
|
| |||| ||||||||| ||||| |||||| ||| ||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
1675281 |
tctataaaaatttgtgaaggtcgtcttct------caacgagagcttttaatttgagggttggattgttgttaactg |
1675351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 1282064 - 1282184
Alignment:
| Q |
20 |
aagttaatatcttgaagattcatacacacacatatttataaagttactatacattcaatgaaagttatttgtagtataacaaattttagttttgaagttt |
119 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||| || || || || |||||||||||||| ||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
1282064 |
aagttaatagcttgaaggttcatatacacacacatata---aggtattatacattcaatgagagttatttgaaatataa---attttagttttgaagttt |
1282157 |
T |
|
| Q |
120 |
tatagaaatttgtgcaggtcatcttct |
146 |
Q |
| |
|
|||| |||||| |||| |||||||||| |
|
|
| T |
1282158 |
tataaaaatttatgcatgtcatcttct |
1282184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University