View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2232_high_7 (Length: 395)

Name: NF2232_high_7
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2232_high_7
NF2232_high_7
[»] chr3 (10 HSPs)
chr3 (13-160)||(5375234-5375381)
chr3 (251-378)||(5375472-5375599)
chr3 (13-160)||(5356821-5356968)
chr3 (30-160)||(5363449-5363579)
chr3 (64-153)||(5369547-5369636)
chr3 (251-366)||(5363668-5363783)
chr3 (76-138)||(7179028-7179090)
chr3 (327-366)||(5369801-5369840)
chr3 (76-137)||(8399989-8400055)
chr3 (75-116)||(7119982-7120023)
[»] chr4 (1 HSPs)
chr4 (75-123)||(36590356-36590404)
[»] chr6 (3 HSPs)
chr6 (75-118)||(33839161-33839204)
chr6 (76-126)||(7174411-7174461)
chr6 (77-118)||(33843077-33843118)
[»] chr5 (1 HSPs)
chr5 (75-116)||(28092141-28092182)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 5375234 - 5375381
Alignment:
Q  13 atactgagatgtcgcaagttcaagaaagaaggtgccggaattcagttaattaaagctaaattcatacctgatggagtagtggaatttttgcttcaaaact 112  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375234 atactgagatgtcgcaagttcaagaaagaaggtgccagaattcagttaattaaagctaaattcatacctgatggagtagtggaatttttgcttcaaaact 5375333  T
Q  113 caccgttagcaaagattaccatcatagataatgatgattaaggtgaaa 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375334 caccgttagcaaagattaccatcatagataatgatgattaaggtgaaa 5375381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 251 - 378
Target Start/End: Original strand, 5375472 - 5375599
Alignment:
Q  251 tacttgtctagtaaaatgaaaattatctaattgtttgagttcatataaggcttgtaacctgaatttgtgtggattttaatacaagttctcaatagtgtta 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375472 tacttgtctagtaaaatgaaaattatctaattgtttgagttcatataaggcttgtaacctgaatttgtgtggattttaatacaagttctcaatagtgtta 5375571  T
Q  351 ccttttcagttgaaacaagatcactgat 378  Q
    ||||||||||||||||||||||||||||    
T  5375572 ccttttcagttgaaacaagatcactgat 5375599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 5356821 - 5356968
Alignment:
Q  13 atactgagatgtcgcaagttcaagaaagaaggtgccggaattcagttaattaaagctaaattcatacctgatggagtagtggaatttttgcttcaaaact 112  Q
    |||||||| | ||||||||||||||||  | ||||||||||||  || |  |||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  5356821 atactgagttttcgcaagttcaagaaaacacgtgccggaattcgtttgaagaaagataaattcataccttatggagtagtggaatttttgcttcaaaact 5356920  T
Q  113 caccgttagcaaagattaccatcatagataatgatgattaaggtgaaa 160  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  5356921 caccgttagcaaagattaacattatagataatgatgattaaggtgaaa 5356968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 5363449 - 5363579
Alignment:
Q  30 gttcaagaaagaaggtgccggaattcagttaattaaagctaaattcatacctgatggagtagtggaatttttgcttcaaaactcaccgttagcaaagatt 129  Q
    |||||| ||||||||| | |||||||| || |  ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  5363449 gttcaataaagaaggttctggaattcatttgaagaaaactaaattcatacctgctggagtagtggaatttttgcttcaaaactcacctttagcaaagatt 5363548  T
Q  130 accatcatagataatgatgattaaggtgaaa 160  Q
    | ||| | | |||||||||||||||||||||    
T  5363549 aacataaaaaataatgatgattaaggtgaaa 5363579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 5369547 - 5369636
Alignment:
Q  64 aaagctaaattcatacctgatggagtagtggaatttttgcttcaaaactcaccgttagcaaagattaccatcatagataatgatgattaa 153  Q
    |||| |||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| | ||||| ||||||||||||||    
T  5369547 aaagataaactcatacctgttggagtagtggaatttttgcttcaaacctcaccgttagcaaaggttaacttcataaataatgatgattaa 5369636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 251 - 366
Target Start/End: Original strand, 5363668 - 5363783
Alignment:
Q  251 tacttgtctagtaaaatgaaaattatctaattgtttgagttcatataaggcttgtaacctgaatttgtgtggattttaatacaagttctcaatagtgtta 350  Q
    |||||||||||||||||||||||   ||| |||||||||||||||||| | | |||| ||||||||||| |||| |||||||||||||||||| ||| ||    
T  5363668 tacttgtctagtaaaatgaaaatgtcctacttgtttgagttcatataacgatagtaatctgaatttgtgcggatgttaatacaagttctcaatggtgata 5363767  T
Q  351 ccttttcagttgaaac 366  Q
    | |||| ||| |||||    
T  5363768 ctttttgagtcgaaac 5363783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 7179028 - 7179090
Alignment:
Q  76 atacctgatggagtagtggaatttttgcttcaaaactcaccgttagcaaagattaccatcata 138  Q
    |||| |||||||||| |||| |||||||||||||||||||| | ||||||| ||| |||||||    
T  7179028 atacttgatggagtactggattttttgcttcaaaactcaccatcagcaaaggttaacatcata 7179090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 366
Target Start/End: Original strand, 5369801 - 5369840
Alignment:
Q  327 taatacaagttctcaatagtgttaccttttcagttgaaac 366  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  5369801 taatacaagttcttaatagtgttactttttcagttgaaac 5369840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 8400055 - 8399989
Alignment:
Q  76 atacctgatggagtagtgga-----atttttgcttcaaaactcaccgttagcaaagattaccatcat 137  Q
    ||||||||||||||||||||     ||||||||||||||||||||| | ||||||| ||| ||||||    
T  8400055 atacctgatggagtagtggactttaatttttgcttcaaaactcaccatcagcaaaggttaacatcat 8399989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 7119982 - 7120023
Alignment:
Q  75 catacctgatggagtagtggaatttttgcttcaaaactcacc 116  Q
    ||||||||||||| |||| || ||||||||||||||||||||    
T  7119982 catacctgatggaatagtcgactttttgcttcaaaactcacc 7120023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 36590404 - 36590356
Alignment:
Q  75 catacctgatggagtagtggaatttttgcttcaaaactcaccgttagca 123  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||| ||||    
T  36590404 catacctgatggaatagtggactttttgattcaaaactcaccgtcagca 36590356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 33839204 - 33839161
Alignment:
Q  75 catacctgatggagtagtggaatttttgcttcaaaactcaccgt 118  Q
    ||||||||||||| ||||||| || |||||||||||||||||||    
T  33839204 catacctgatggaatagtggacttcttgcttcaaaactcaccgt 33839161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 7174461 - 7174411
Alignment:
Q  76 atacctgatggagtagtggaatttttgcttcaaaactcaccgttagcaaag 126  Q
    |||| ||||||| || |||||||||| |||||||||||||||| |||||||    
T  7174461 atacatgatggaatattggaatttttccttcaaaactcaccgtcagcaaag 7174411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 33843118 - 33843077
Alignment:
Q  77 tacctgatggagtagtggaatttttgcttcaaaactcaccgt 118  Q
    ||||||||||| ||||||| || |||||||||||||||||||    
T  33843118 tacctgatggaatagtggacttcttgcttcaaaactcaccgt 33843077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 28092141 - 28092182
Alignment:
Q  75 catacctgatggagtagtggaatttttgcttcaaaactcacc 116  Q
    ||||||||||||| ||||||| |||||| |||||||||||||    
T  28092141 catacctgatggaatagtggactttttgattcaaaactcacc 28092182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University