View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232_low_1 (Length: 607)
Name: NF2232_low_1
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 25 - 587
Target Start/End: Complemental strand, 17904025 - 17903463
Alignment:
| Q |
25 |
ggcaacatctccggcaaacctctatcaatgatcaacatctccgtccttctccatcttccgcaatccaattgatgcgacgattgaacgctcgaaatcgggt |
124 |
Q |
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| T |
17904025 |
ggcaacatctccggcaaacctccatcaatgatcaacatctccgtccttctccatcttccgcaatccatttgatgcgacgattgaacgctcgaaatcgggt |
17903926 |
T |
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| Q |
125 |
cgattcatcaaatccaaacaaaatggatcatccaacaacaaagaaactccacatccgttccacaaatctcttctctcgcaccaccaacaccaattcacga |
224 |
Q |
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| T |
17903925 |
cgattcatcaaatccaaacgaaatggatcatccaacaacaaagaaactccaaatccgttccacaaatctcttctctcgcaccaccaacaccaattcacga |
17903826 |
T |
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| Q |
225 |
tgtatatccttcaacaacacgttcatcggttttctcatcttctcattcattttaatcttcacatactacaccctcttctcttccccgccggaaaaatctc |
324 |
Q |
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| T |
17903825 |
tgcatatccttcaacaacacgttcatcggttttctcatcttctcattcattttaatcttcacatactacaccctcttctcttccccgccggaaaaatctc |
17903726 |
T |
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| Q |
325 |
tccggtaccggataatcatcgacggtggaagcacaggaactagggttcatgtattcaaatacaagatgaaaaacgcattggattttgggaagaagggttt |
424 |
Q |
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| T |
17903725 |
tccggtaccggataatcatcgacggtggaagcacaggaactagggttcatgtattcaaatacaagatgaaaaacgcattggattttgggaagaagggttt |
17903626 |
T |
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| Q |
425 |
ggtttctatgagagtgaatccgggtttatcgtcgtttgggaatgatccggatggggcggggagatcgttgttggaggtggtggattttgcgaaaagacgg |
524 |
Q |
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| T |
17903625 |
ggtttctatgagagtgaatccgggtttatcgtcgtttgggaatgatccggatggggcggggagatcgttgttggaggtggtggattttgcgaaaagacgg |
17903526 |
T |
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| Q |
525 |
atcccgaaggagaattggagggaaacggagattcggcttatggctactgctgggatgagaatg |
587 |
Q |
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| T |
17903525 |
atcccgaaggagaattggagggaaacggagattcggcttatggctactgctgggatgagaatg |
17903463 |
T |
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