View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232_low_12 (Length: 379)
Name: NF2232_low_12
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232_low_12 |
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| [»] scaffold0503 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 54 - 362
Target Start/End: Complemental strand, 13660855 - 13660552
Alignment:
| Q |
54 |
acataaaaatacaagagctttctaaatgaataccattcatacaccgatgcggaggcttccacaaagaagaatgtatgatgatctaaacactcgtgatgtt |
153 |
Q |
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| T |
13660855 |
acataaaaatacaagagctttctaaatgaatatcattcgtacaccgatgaggaggcttccacaaagaagaatgtattat---ctaaacactcatgatgtt |
13660759 |
T |
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| Q |
154 |
ttacttgcaagtaacaaacttctagtatttaaattgaaaccatcttaaagaagttagaagcaaagattctatttcaaatctcatcaaaaagtttggggtg |
253 |
Q |
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| T |
13660758 |
t-acttgcaagtaacaaacttctagtatttaaattgaaaccattttaaagaagttagaagcaaagat-ctatttcaaatctcatcaaaaagttcagggtg |
13660661 |
T |
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| Q |
254 |
tgacttgtgtgaacaagctcatgcaagtggtgcatgcattccgacaagtttggagttatcagacgagcatgtaaaatacttgggttgcatatgcaagaaa |
353 |
Q |
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| T |
13660660 |
tgacttgtgtgaacaagctcatgcaagtggtgcatgcattccgacaagtttggaattatcagacgagcatgtaaaatacttgggttgcatatgcaagaaa |
13660561 |
T |
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| Q |
354 |
tctgaggaa |
362 |
Q |
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| T |
13660560 |
tctgaggaa |
13660552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13661202 - 13661155
Alignment:
| Q |
1 |
attatactataataactacaccaagtatcaaatatgtcaaaacatata |
48 |
Q |
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| T |
13661202 |
attatactataataatcacaccaagtatcaaatatatcaaaacatata |
13661155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0503 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0503
Description:
Target: scaffold0503; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 3667 - 3593
Alignment:
| Q |
104 |
ggaggcttccacaaagaagaatg-tatgat-gatctaaacactcgtgatgttttacttgcaagtaacaaacttct |
176 |
Q |
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| T |
3667 |
ggaggcttccccaaaggagaaaggtatgatagatctaaacgctcgggatgttttacttgctattaacaaacttct |
3593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 322
Target Start/End: Complemental strand, 10052437 - 10052367
Alignment:
| Q |
252 |
tgtgacttgtgtgaacaagctcatgcaagtggtgcatgcattccgacaagtttggagttatcagacgagca |
322 |
Q |
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| T |
10052437 |
tgtgacttttgtgagcaaactcatgaaagaggtgcatgccttccaataagtttggagttatctgaggagca |
10052367 |
T |
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