View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2232_low_15 (Length: 345)

Name: NF2232_low_15
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2232_low_15
NF2232_low_15
[»] chr1 (5 HSPs)
chr1 (22-208)||(48593751-48593937)
chr1 (22-208)||(48598362-48598548)
chr1 (225-265)||(48593931-48593971)
chr1 (225-265)||(48598542-48598582)
chr1 (308-336)||(49946712-49946740)
[»] chr7 (1 HSPs)
chr7 (301-336)||(30891119-30891154)
[»] chr4 (1 HSPs)
chr4 (308-336)||(45741982-45742010)
[»] chr3 (1 HSPs)
chr3 (308-336)||(24560309-24560337)
[»] chr2 (2 HSPs)
chr2 (308-336)||(20545801-20545829)
chr2 (308-336)||(29525857-29525885)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 9e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 48593751 - 48593937
Alignment:
Q  22 tcacacacctaaatctccttttatctatcttttctggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaa 121  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48593751 tcacacacctaaatctccttttatctatcttttttggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaa 48593850  T
Q  122 ttcctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacaattgcactgggattgggacgggttgaatagtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  48593851 ttcctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacatttgcattgggattgggacgggttgaagagtt 48593937  T

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Target: chr1; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 48598362 - 48598548
Alignment:
Q  22 tcacacacctaaatctccttttatctatcttttctggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaa 121  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48598362 tcacacacctaaatctccttttatctatcttttttggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaa 48598461  T
Q  122 ttcctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacaattgcactgggattgggacgggttgaatagtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  48598462 ttcctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacatttgcattgggattgggacgggttgaagagtt 48598548  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 48593931 - 48593971
Alignment:
Q  225 aagagtttatttggatagagagtttaagaaggtagagttca 265  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  48593931 aagagtttgtttggatagagagtttaagaaggtagagttca 48593971  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 48598542 - 48598582
Alignment:
Q  225 aagagtttatttggatagagagtttaagaaggtagagttca 265  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  48598542 aagagtttgtttggatagagagtttaagaaggtagagttca 48598582  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Complemental strand, 49946740 - 49946712
Alignment:
Q  308 aaataaattaaatgtgattgaagtattat 336  Q
    |||||||||||||||||||||||||||||    
T  49946740 aaataaattaaatgtgattgaagtattat 49946712  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Complemental strand, 30891154 - 30891119
Alignment:
Q  301 tttttataaataaattaaatgtgattgaagtattat 336  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30891154 tttttttaaataaattaaatgtgattgaagtattat 30891119  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Original strand, 45741982 - 45742010
Alignment:
Q  308 aaataaattaaatgtgattgaagtattat 336  Q
    |||||||||||||||||||||||||||||    
T  45741982 aaataaattaaatgtgattgaagtattat 45742010  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Original strand, 24560309 - 24560337
Alignment:
Q  308 aaataaattaaatgtgattgaagtattat 336  Q
    |||||||||||||||||||||||||||||    
T  24560309 aaataaattaaatgtgattgaagtattat 24560337  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Original strand, 20545801 - 20545829
Alignment:
Q  308 aaataaattaaatgtgattgaagtattat 336  Q
    |||||||||||||||||||||||||||||    
T  20545801 aaataaattaaatgtgattgaagtattat 20545829  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 336
Target Start/End: Complemental strand, 29525885 - 29525857
Alignment:
Q  308 aaataaattaaatgtgattgaagtattat 336  Q
    |||||||||||||||||||||||||||||    
T  29525885 aaataaattaaatgtgattgaagtattat 29525857  T

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