View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232_low_16 (Length: 342)
Name: NF2232_low_16
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 37264836 - 37264656
Alignment:
| Q |
143 |
ttataaaggaatgttggtggattttgtttatgggttggagtagtcgtgggaaaagggttgatgatgtgcatacattttatagtaataatccgaagtgtga |
242 |
Q |
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| T |
37264836 |
ttataaaggaatgttggtggattttgtttgtgggttggagtagtcgtaggaaaaaggttgatgatgtacatacattttatagtaataatccgaagtgtga |
37264737 |
T |
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| Q |
243 |
ggaaagccattggttatttgaaatttcaaaaatattttataaccttgtgatctcaataacatgaagataatatgataatgg |
323 |
Q |
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| T |
37264736 |
ggaaagccgatggttatttgaaattccaaaaatattttattaccttgtgatctcaataacatgaagataatatgataatgg |
37264656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 37264966 - 37264896
Alignment:
| Q |
12 |
agcataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccatga |
82 |
Q |
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| T |
37264966 |
agcataggcgagaccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccatga |
37264896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 37261193 - 37261132
Alignment:
| Q |
12 |
agcataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaat |
73 |
Q |
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| T |
37261193 |
agcataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaat |
37261132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 37264427 - 37264357
Alignment:
| Q |
253 |
tggttatttgaaatttcaaaaatattttataaccttgtgatctcaataacatgaagataatatgataatgg |
323 |
Q |
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| T |
37264427 |
tggtcatttgaaattacaaaaatattttagaaccatgtgatttcaataacatgaagataatatgataatgg |
37264357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 37276916 - 37276846
Alignment:
| Q |
12 |
agcataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccatga |
82 |
Q |
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| T |
37276916 |
agcataggcaaggccaatcatggctaacattacaagggctagaataacaacatgccttgaatgtgccatga |
37276846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 37280765 - 37280695
Alignment:
| Q |
12 |
agcataggcaagaccaatcatggccaacattacaagggcgagaataacgacataccttgaatgtgccatga |
82 |
Q |
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| T |
37280765 |
agcataggtaaggccaatcatggccaacattacaagggccagaataacaacatgccttgaacgtgccatga |
37280695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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