View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2232_low_18 (Length: 312)

Name: NF2232_low_18
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2232_low_18
NF2232_low_18
[»] chr7 (19 HSPs)
chr7 (106-268)||(49042671-49042833)
chr7 (1-78)||(8080380-8080454)
chr7 (1-77)||(19436184-19436257)
chr7 (1-77)||(38267070-38267143)
chr7 (1-78)||(7389418-7389492)
chr7 (1-78)||(19329871-19329945)
chr7 (1-78)||(38837246-38837320)
chr7 (1-78)||(3434591-3434665)
chr7 (1-78)||(3784024-3784098)
chr7 (1-78)||(4999511-4999585)
chr7 (1-78)||(8238242-8238316)
chr7 (1-78)||(35137562-35137636)
chr7 (1-78)||(36361910-36361984)
chr7 (1-76)||(36362057-36362129)
chr7 (1-78)||(35522905-35522979)
chr7 (1-77)||(3694397-3694470)
chr7 (1-78)||(40957736-40957810)
chr7 (1-78)||(41915770-41915844)
chr7 (1-57)||(32951490-32951543)
[»] chr8 (17 HSPs)
chr8 (1-78)||(14547951-14548025)
chr8 (1-78)||(23122594-23122668)
chr8 (1-78)||(15197362-15197436)
chr8 (1-77)||(12831077-12831150)
chr8 (1-78)||(504118-504192)
chr8 (1-78)||(15048179-15048252)
chr8 (4-78)||(37038508-37038579)
chr8 (1-78)||(5957859-5957933)
chr8 (1-74)||(8841429-8841499)
chr8 (1-78)||(40423940-40424014)
chr8 (1-77)||(10284628-10284701)
chr8 (1-76)||(10621084-10621156)
chr8 (1-76)||(34012293-34012365)
chr8 (1-78)||(43414578-43414652)
chr8 (1-76)||(1179937-1180009)
chr8 (1-76)||(44507084-44507156)
chr8 (1-63)||(9122229-9122288)
[»] chr2 (20 HSPs)
chr2 (1-78)||(20700844-20700918)
chr2 (1-78)||(28863484-28863558)
chr2 (1-77)||(10249379-10249452)
chr2 (1-78)||(7465732-7465806)
chr2 (1-78)||(9058509-9058583)
chr2 (1-78)||(17473049-17473123)
chr2 (1-78)||(28381652-28381726)
chr2 (4-77)||(32505648-32505718)
chr2 (1-78)||(33436097-33436171)
chr2 (1-78)||(40613899-40613973)
chr2 (1-77)||(13438373-13438446)
chr2 (1-78)||(5574485-5574559)
chr2 (1-78)||(27864733-27864807)
chr2 (1-78)||(38273139-38273213)
chr2 (1-78)||(40701507-40701581)
chr2 (1-78)||(42257222-42257296)
chr2 (4-77)||(4060715-4060785)
chr2 (1-78)||(19930817-19930891)
chr2 (1-78)||(30915492-30915566)
chr2 (1-78)||(2533153-2533226)
[»] chr6 (11 HSPs)
chr6 (1-78)||(32869707-32869781)
chr6 (1-78)||(22880655-22880729)
chr6 (1-78)||(11427647-11427721)
chr6 (1-78)||(17598583-17598657)
chr6 (1-78)||(29857856-29857930)
chr6 (1-78)||(6209462-6209536)
chr6 (1-78)||(31109397-31109471)
chr6 (1-78)||(31976277-31976351)
chr6 (1-76)||(23128124-23128196)
chr6 (36-76)||(946407-946447)
chr6 (1-78)||(31110758-31110830)
[»] chr5 (16 HSPs)
chr5 (1-78)||(13811681-13811755)
chr5 (1-78)||(18520881-18520955)
chr5 (1-78)||(2740303-2740377)
chr5 (1-78)||(28177804-28177878)
chr5 (1-78)||(36732939-36733013)
chr5 (1-78)||(6679727-6679801)
chr5 (1-78)||(40145436-40145510)
chr5 (1-78)||(42414299-42414373)
chr5 (1-76)||(33149635-33149707)
chr5 (4-78)||(14831843-14831914)
chr5 (1-67)||(15409607-15409670)
chr5 (1-78)||(26720545-26720619)
chr5 (1-78)||(26990294-26990368)
chr5 (1-78)||(35785228-35785302)
chr5 (1-78)||(35943889-35943963)
chr5 (4-63)||(31009032-31009088)
[»] chr4 (20 HSPs)
chr4 (1-78)||(48183046-48183120)
chr4 (1-78)||(50052425-50052499)
chr4 (1-78)||(11511459-11511533)
chr4 (1-78)||(29234242-29234316)
chr4 (1-78)||(41236376-41236450)
chr4 (1-77)||(480444-480517)
chr4 (1-77)||(54473530-54473603)
chr4 (1-63)||(41823926-41823985)
chr4 (1-78)||(6034073-6034147)
chr4 (1-78)||(29239915-29239989)
chr4 (1-77)||(23608265-23608338)
chr4 (1-77)||(31910222-31910295)
chr4 (1-63)||(42044364-42044423)
chr4 (1-78)||(3481683-3481757)
chr4 (1-78)||(24995104-24995178)
chr4 (1-78)||(29977914-29977988)
chr4 (39-78)||(50526203-50526242)
chr4 (1-78)||(55475220-55475294)
chr4 (40-76)||(40574810-40574846)
chr4 (1-63)||(53352563-53352622)
[»] chr3 (19 HSPs)
chr3 (1-78)||(33644229-33644303)
chr3 (1-78)||(53982040-53982114)
chr3 (1-78)||(31456718-31456792)
chr3 (1-78)||(52629329-52629403)
chr3 (1-76)||(27714888-27714960)
chr3 (1-74)||(8076426-8076496)
chr3 (1-78)||(17470434-17470508)
chr3 (1-78)||(26141529-26141603)
chr3 (1-78)||(48587088-48587162)
chr3 (1-78)||(49607443-49607517)
chr3 (1-78)||(54868892-54868966)
chr3 (1-78)||(11095352-11095424)
chr3 (1-78)||(41189761-41189835)
chr3 (1-77)||(11347919-11347992)
chr3 (1-78)||(26754724-26754798)
chr3 (1-77)||(33118848-33118921)
chr3 (1-77)||(51419357-51419430)
chr3 (1-76)||(20764912-20764984)
chr3 (36-77)||(36707453-36707494)
[»] chr1 (20 HSPs)
chr1 (1-78)||(8346385-8346459)
chr1 (1-78)||(44548373-44548447)
chr1 (4-78)||(2581944-2582015)
chr1 (1-78)||(3000348-3000422)
chr1 (1-78)||(9474873-9474947)
chr1 (1-78)||(27564732-27564806)
chr1 (1-78)||(32813276-32813350)
chr1 (1-78)||(38595183-38595257)
chr1 (1-78)||(41758834-41758908)
chr1 (1-78)||(48716279-48716353)
chr1 (4-78)||(51898683-51898754)
chr1 (1-77)||(43162-43235)
chr1 (1-77)||(26440764-26440837)
chr1 (1-76)||(47452317-47452389)
chr1 (1-78)||(38632318-38632392)
chr1 (1-78)||(45044557-45044631)
chr1 (1-78)||(50630487-50630561)
chr1 (1-77)||(13414791-13414864)
chr1 (1-77)||(49811524-49811597)
chr1 (1-78)||(5958997-5959071)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-78)||(4058-4132)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 7e-80; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 106 - 268
Target Start/End: Complemental strand, 49042833 - 49042671
Alignment:
Q  106 aaagattaatggatttaaacttttgatttaataatgaaagaaaggaaagggacagcttccgttgaaacaaattttgtaattttccctataaagaaatgac 205  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49042833 aaagatgaatggatttaaacttttgatttaataatgaaagaaaggagagggacagcttccgttgaagcaaattttgtaattttccctataaagaaatgac 49042734  T
Q  206 agttgagcttgctccaaacgcaagtccctctgctttataaaccaacgatacccaagtctttta 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49042733 agttgagcttgctccaaacgcaagtccctctgctttataaaccaacgatacccaagtctttta 49042671  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 8080380 - 8080454
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||||||   |||||||||||||| ||||||||||||| ||||||||||    
T  8080380 aagagaaagtgtgcttgtgcggggtccacgtgacta---cgtgtcagatttttatgtaggtgtcaaagggtgtattgc 8080454  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19436184 - 19436257
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    ||||||||||||||||||||||| |||| |||||||   |||||||||||||||||| ||||||||| |||||||||    
T  19436184 aagagaaagtgtgcttatgcgggatccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaaaggtgtattg 19436257  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 38267143 - 38267070
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||||| |||||||||    
T  38267143 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattg 38267070  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 7389492 - 7389418
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| ||||||||   ||||||||||||||||| |||||||||  |||||||||    
T  7389492 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagagtgtattgc 7389418  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 19329945 - 19329871
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||| |||   ||||||||||||||||| ||||||||| ||||||||||    
T  19329945 aagagaaagtgtgcttgtgcggggtccacgtgattac---gtgtcagatttttgtgtgggtgtcaaaaggtgtattgc 19329871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 38837320 - 38837246
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| ||||||||   |||||||||||||||||||||||  || ||||||||||    
T  38837320 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtaggtgtacaagggtgtattgc 38837246  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 3434665 - 3434591
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||| |||| ||||||||   ||||||| ||||||||| ||||||||| ||||||||||    
T  3434665 aagagaaagtgtgcttgtgcgggatccacgtgactac---gtgtcagttttttgtgtgggtgtcaaagggtgtattgc 3434591  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 3784098 - 3784024
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||| |||| ||||||||   ||||||||||||||||| ||||||||| | ||||||||    
T  3784098 aagagaaagtgtgcttgtgcgggatccacgtgactac---gtgtcagatttttgtgtgggtgtcaaaagatgtattgc 3784024  T

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Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 4999511 - 4999585
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| || ||||||||||| ||||||||   || |||||||||||||| ||||||||| ||||||||||    
T  4999511 aagagaaagtgtgtttgtgcggggtccacgtgactac---gtatcagatttttgtgtgggtgtcaaaaggtgtattgc 4999585  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8238316 - 8238242
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||| ||| |||||||||||| |||||||    |||||||||||||||| ||||||||| ||||||||||    
T  8238316 aagagaaagtgtacttgtgcggggtccatatgactaca---tgtcagatttttgtgtgggtgtcaaagggtgtattgc 8238242  T

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Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 35137636 - 35137562
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| || ||||||||||| ||||||||   |||| |||||||||||| ||||||||| ||||||||||    
T  35137636 aagagaaagtgtgtttgtgcggggtccacgtgactac---gtgttagatttttgtgtgggtgtcaaagggtgtattgc 35137562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 36361910 - 36361984
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| || |||||||| |||||||   |||||||||||||||||| ||||||||| | ||||||||    
T  36361910 aagagaaagtgtgcttgtgtggggtccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaaggatgtattgc 36361984  T

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Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 36362129 - 36362057
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtatt 76  Q
    |||||||||||||||| || |||||||| ||||||||   ||||||||||||||||| ||||||||| | ||||||    
T  36362129 aagagaaagtgtgcttgtgtggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaaggatgtatt 36362057  T

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Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 35522979 - 35522905
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||| ||||| ||    | ||||||||||||||||||| ||||| ||||||||||||||    
T  35522979 aagagaaagtgtgcttgtgcgggatccatatg---gccacgtgtcagatttttgtgtgggtgttaaatggtgtattgc 35522905  T

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Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 3694470 - 3694397
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||| |||||| ||||  |||||||   ||||||||||||||||| ||||| ||| |||||||||    
T  3694470 aagagaaagtgtgcttgtgcgggatccacatgactac---gtgtcagatttttgtgtgggtgttaaaaggtgtattg 3694397  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 40957810 - 40957736
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| | |||| |||| ||||||||   ||||||||||||||||| ||| |||||  |||||||||    
T  40957810 aagagaaagtgtgcttgtacgggatccacgtgactac---gtgtcagatttttgtgtgggtatcaaagagtgtattgc 40957736  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41915844 - 41915770
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||| ||| |||||||||||| || | ||    |||||||||||||||||||||||||  ||||||||||    
T  41915844 aagagaaagtgtacttgtgcggggtccatatggccaca---tgtcagatttttgtgtaggtgtcaaggggtgtattgc 41915770  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32951490 - 32951543
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgt 57  Q
    |||||||||||||||| ||||||||||| |||   ||||||||| ||||||||||||    
T  32951490 aagagaaagtgtgcttgtgcggggtccacgtg---actacgtgttagatttttgtgt 32951543  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 14548025 - 14547951
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||||||||||||||||    
T  14548025 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaatggtgtattgc 14547951  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 23122594 - 23122668
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||||||||||||||| |||||||   |||||||||||||||||| ||||||||| ||||||||||    
T  23122594 aagagaaagtgtgcttatgcggggtccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgc 23122668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 15197436 - 15197362
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  15197436 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 15197362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12831150 - 12831077
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||||| |||||||||    
T  12831150 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattg 12831077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 504118 - 504192
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||| |||||||| ||||||||||| |||||||   |||||||||||||||||| ||||||||| ||||||||||    
T  504118 aagagaatgtgtgcttgtgcggggtccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgc 504192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 15048179 - 15048252
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||||||||||||    ||||||||||||||||||||| ||||||||| ||||||||||    
T  15048179 aagagaaagtgtgcttgtgcggggtccatgtg---gctacgtgtcagatttttgtgt-ggtgtcaaagggtgtattgc 15048252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 37038579 - 37038508
Alignment:
Q  4 agaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| |||||| |||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  37038579 agaaagtgtgcttgtgcgggatccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 37038508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 5957933 - 5957859
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| || |||||| |||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  5957933 aagagaaagtgtgattgtgcgggatccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 5957859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8841429 - 8841499
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgta 74  Q
    |||||||||||||||| ||||||||||| |||   ||||||||| |||||||||||| ||||||||| ||||||    
T  8841429 aagagaaagtgtgcttgtgcggggtccacgtg---actacgtgttagatttttgtgtgggtgtcaaagggtgta 8841499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 40423940 - 40424014
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||||||||  ||||||   |||||||||||||||||| | ||||||| ||||||||||    
T  40423940 aagagaaagtgtgcttgtgcggggtccacatgacta---cgtgtcagatttttgtgtggatgtcaaagggtgtattgc 40424014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10284628 - 10284701
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||| ||||||||||| |||   ||||||||||| |||||||||| |||||||||  ||||||||    
T  10284628 aagagaaagtgtgcttgtgcggggtccacgtg---actacgtgtcaaatttttgtgtgggtgtcaaagagtgtattg 10284701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 10621084 - 10621156
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtatt 76  Q
    |||||||||||||||| |||||| || ||||| ||||   ||||||||||||||||| ||||||||| ||||||||    
T  10621084 aagagaaagtgtgcttgtgcgggatcgatgtggctac---gtgtcagatttttgtgtgggtgtcaaagggtgtatt 10621156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34012293 - 34012365
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtatt 76  Q
    |||||||||||||||| |||||| |||| |||||||   ||||||| |||||||||| ||||||||| ||||||||    
T  34012293 aagagaaagtgtgcttgtgcgggatccacgtgacta---cgtgtcaaatttttgtgtgggtgtcaaagggtgtatt 34012365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 43414578 - 43414652
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||| ||||||||   || |||||| |||||||||||| ||||||||| ||||| ||||    
T  43414578 aagagaaagtgtgcttgtgcgggatccatgtg---accacgtgttagatttttgtgtgggtgtcaaagggtgtgttgc 43414652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1179937 - 1180009
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtatt 76  Q
    |||||||||||||||| |||||  ||||  ||   |||||||||||||||||||||| ||||||||| ||||||||    
T  1179937 aagagaaagtgtgcttgtgcggaatccacatg---actacgtgtcagatttttgtgtgggtgtcaaagggtgtatt 1180009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44507084 - 44507156
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtatt 76  Q
    |||||||||| ||||| | ||||||||| |||||||   |||||||||||||||||| ||||| |||  |||||||    
T  44507084 aagagaaagtatgcttgtacggggtccacgtgacta---cgtgtcagatttttgtgtgggtgttaaagagtgtatt 44507156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9122288 - 9122229
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgt 63  Q
    |||||||||||||||| |||||| |||| |||   ||||| |||||||||||||||| |||||    
T  9122288 aagagaaagtgtgcttgtgcgggatccacgtg---actacatgtcagatttttgtgtgggtgt 9122229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 20700918 - 20700844
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||||||||||||||| ||||||||   |||||||||||||||||||| |||||| ||||||||||    
T  20700918 aagagaaagtgtgcttatgcggggtccacgtgactac---gtgtcagatttttgtgtaggagtcaaagggtgtattgc 20700844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 28863558 - 28863484
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  28863558 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 28863484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10249379 - 10249452
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||| ||||||||||| |||||||   |||||||||||||||||| ||||||||| |||||||||    
T  10249379 aagagaaagtgtgcttgtgcggggtccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaaaggtgtattg 10249452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 7465732 - 7465806
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| || |||||||| |||||||   |||||||||||||||||| ||||||||| ||||||||||    
T  7465732 aagagaaagtgtgcttgtgtggggtccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaagggtgtattgc 7465806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9058583 - 9058509
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||||||||  |||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  9058583 aagagaaagtgtgcttgtgcggggtccacatgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 9058509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 17473123 - 17473049
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||| |||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  17473123 aagagaaagtgtgcttgtgcgggatccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 17473049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 28381652 - 28381726
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||| |||||||||||||   |||||||||||||||||| |||||| || ||||||||||    
T  28381652 aagagaaagtgtgcttgtgcggagtccatgtgacta---cgtgtcagatttttgtgtgggtgtcgaaaggtgtattgc 28381726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 32505648 - 32505718
Alignment:
Q  4 agaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    ||||||||||||| ||||||||||| |||||||   |||||||||||||||||| ||||||||| |||||||||    
T  32505648 agaaagtgtgcttgtgcggggtccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaaaggtgtattg 32505718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 33436097 - 33436171
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| ||||||||   |||| |||||||||||| ||||||||| ||||||||||    
T  33436097 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgttagatttttgtgtgggtgtcaaagggtgtattgc 33436171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 40613899 - 40613973
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||||||| ||||||||| ||||||||||    
T  40613899 aagagaaagtgtgcttgtgcggggtccatgtg---gccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgc 40613973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13438446 - 13438373
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||||| | |||||||    
T  13438446 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaaggatgtattg 13438373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 5574485 - 5574559
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||| |||| |||||||   |||||||||||||| ||| ||||||||| ||||||||||    
T  5574485 aagagaaagtgtgcttgtgcgggatccacgtgacta---cgtgtcagatttttatgtgggtgtcaaagggtgtattgc 5574559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 27864807 - 27864733
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||| |||   ||||||||||||||||| | ||||||| ||||||||||    
T  27864807 aagagaaagtgtgcttttgcggggtccacgtgattac---gtgtcagatttttgtgtggatgtcaaagggtgtattgc 27864733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 38273139 - 38273213
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||  ||||||||||||||| ||||   ||||||||||||||||| ||||| ||| ||||||||||    
T  38273139 aagagaaagtgtgctagtgcggggtccatgtggctac---gtgtcagatttttgtgtgggtgttaaagggtgtattgc 38273213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 40701581 - 40701507
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| || ||||||||||| || |||||   ||||||||||||||||| ||||||||| ||||||||||    
T  40701581 aagagaaagtgtgattgtgcggggtccacgtaactac---gtgtcagatttttgtgtgggtgtcaaaaggtgtattgc 40701507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 42257296 - 42257222
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||||||||||||    | ||||||||||||||| ||| ||||||||||| ||||||||    
T  42257296 aagagaaagtgtgcttgtgcggggtccatgtg---gccacgtgtcagatttttatgtgggtgtcaaatgatgtattgc 42257222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 4060785 - 4060715
Alignment:
Q  4 agaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||||||| |||| || |||||   ||||||||||||||||| | ||||||| |||||||||    
T  4060785 agaaagtgtgcttatgcgggatccacgtaactac---gtgtcagatttttgtgtggatgtcaaaaggtgtattg 4060715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 19930817 - 19930891
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| || |||||||||||  ||||||   |||||||||||||||||| | ||||||| ||||||||||    
T  19930817 aagagaaagtgtgtttgtgcggggtccacatgacta---cgtgtcagatttttgtgtggatgtcaaagggtgtattgc 19930891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 30915566 - 30915492
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| | ||||||||| ||||||||   ||||||||||||| ||| || |||||| ||||||||||    
T  30915566 aagagaaagtgtgcttgtacggggtccacgtgactac---gtgtcagatttttatgtgggggtcaaagggtgtattgc 30915492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 2533226 - 2533153
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||| ||||||||||| ||||||||| ||||| ||||   ||||||||||||||||| ||||||||| | ||||||||    
T  2533226 aagaaaaagtgtgcttgtgcggggtctatgtggctac---gtgtcagatttttgtgt-ggtgtcaaaggatgtattgc 2533153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 32869781 - 32869707
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  32869781 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 32869707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 22880655 - 22880729
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||||||   ||||||||| |||||||| ||||||||| ||||||||||    
T  22880655 aagagaaagtgtgcttgtgcggggtccacgtgacta---cgtgtcagaattttgtgtgggtgtcaaagggtgtattgc 22880729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 11427721 - 11427647
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||| |||| ||||||||   ||||||||||||||||| ||||||||| | ||||||||    
T  11427721 aagagaaagtgtgcttgtgcgggatccacgtgactac---gtgtcagatttttgtgtgggtgtcaaaggatgtattgc 11427647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 17598657 - 17598583
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| ||||| ||   ||||||||||||||||| ||||||||| | ||||||||    
T  17598657 aagagaaagtgtgcttgtgcggggtccacgtgacaac---gtgtcagatttttgtgtgggtgtcaaaagatgtattgc 17598583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29857930 - 29857856
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||||||||||||| |||| || |||||   ||||||||||||||||| ||||| ||| ||||||||||    
T  29857930 aagagaaagtgtgcttatgcgggatccacgtaactac---gtgtcagatttttgtgtgggtgttaaaaggtgtattgc 29857856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 6209462 - 6209536
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||  ||||||||||| ||||||||   ||| |||||||||||||  ||||||||| |||||||||    
T  6209462 aagagaaagtgtgctagtgcggggtccacgtgactac---gtgacagatttttgtgtgagtgtcaaatagtgtattgc 6209536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 31109397 - 31109471
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||| ||| ||||||||| | |||||||   |||||||||||||||||| | ||||||| ||||||||||    
T  31109397 aagagaaagtgtacttttgcggggtctacgtgacta---cgtgtcagatttttgtgtggatgtcaaagggtgtattgc 31109471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 31976351 - 31976277
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||||| ||||||   || ||||||||||||||||||| ||||| ||| ||| ||||||    
T  31976351 aagagaaagtgtgcttgtgcggggttcatgtg---accacgtgtcagatttttgtgtgggtgttaaagggtatattgc 31976277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 23128124 - 23128196
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtatt 76  Q
    |||||||||||||||| || ||| |||| |||||||   |||||||||||||||||| ||||||||| | ||||||    
T  23128124 aagagaaagtgtgcttgtgtgggatccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaaggatgtatt 23128196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 946447 - 946407
Alignment:
Q  36 actacgtgtcagatttttgtgtaggtgtcaaatggtgtatt 76  Q
    |||| |||||||||||||| |||||||||||| ||||||||    
T  946447 actaggtgtcagatttttgggtaggtgtcaaagggtgtatt 946407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 31110758 - 31110830
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||| |||||||||||     |||||||||||||||||||   |||||||| ||||||||||    
T  31110758 aagagaaagtgtgcttgtgcagggtccatgtg---gttacgtgtcagatttttgtg--agtgtcaaagggtgtattgc 31110830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 13811755 - 13811681
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||||||| ||||||||    
T  13811755 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaatgatgtattgc 13811681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 18520881 - 18520955
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||||||   |||||||||||||||||| ||||||||| ||||||||||    
T  18520881 aagagaaagtgtgcttgtgcggggtccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaagggtgtattgc 18520955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 2740377 - 2740303
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||| |||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  2740377 aagagaaagtgtgcttgtgcgggatccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 2740303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 28177878 - 28177804
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| || ||||||||||||||||| ||   ||||||||||||||||| ||||||||| ||||||||||    
T  28177878 aagagaaagtgtgtttgtgcggggtccatgtgaccac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 28177804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 36732939 - 36733013
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||||||    ||||||||||||||||| ||||||||| ||||||||||    
T  36732939 aagagaaagtgtgcttgtgcggggtccacgtgactat---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 36733013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6679801 - 6679727
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||| |||| || ||||||||||||||||| ||   ||||||||||||||||| ||||||||| ||||||||||    
T  6679801 aagagaaaatgtgtttgtgcggggtccatgtgaccac---gtgtcagatttttgtgtgggtgtcaaaaggtgtattgc 6679727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 40145510 - 40145436
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||   |||||||||||||||||||||| | ||| ||| ||||||||||    
T  40145510 aagagaaagtgtgcttgtgcggggtccacgtg---actacgtgtcagatttttgtgtggatgttaaagggtgtattgc 40145436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 42414299 - 42414373
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||| ||||||||||| |||||||||||  ||||||   |||||||||||||||||| ||||||||| ||||||||||    
T  42414299 aagataaagtgtgcttgtgcggggtccacatgacta---cgtgtcagatttttgtgtgggtgtcaaagggtgtattgc 42414373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33149635 - 33149707
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtatt 76  Q
    |||||||||||||||| |||||| |||| |||||||   ||||||| |||||||||| ||||||||| ||||||||    
T  33149635 aagagaaagtgtgcttgtgcgggatccacgtgacta---cgtgtcaaatttttgtgtgggtgtcaaagggtgtatt 33149707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 14831914 - 14831843
Alignment:
Q  4 agaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| |||||| |||| ||||||||   ||||||||||||| ||| ||||||||| ||||||||||    
T  14831914 agaaagtgtgcttgtgcgggatccacgtgactac---gtgtcagatttttatgtgggtgtcaaagggtgtattgc 14831843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 15409607 - 15409670
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaa 67  Q
    |||||| ||||||||| ||||||||||||||| ||||   ||||||||||||||||| |||||||||    
T  15409607 aagagagagtgtgcttgtgcggggtccatgtggctac---gtgtcagatttttgtgtgggtgtcaaa 15409670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26720619 - 26720545
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||| ||||||||    | ||||||||||||||| ||||||||| ||| ||||||||||    
T  26720619 aagagaaagtgtgcttgtgcgggatccatgtg---gccacgtgtcagatttttttgtaggtgttaaagggtgtattgc 26720545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26990368 - 26990294
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||| ||||||||    | ||||||||||||||| ||||||||| ||| ||||||||||    
T  26990368 aagagaaagtgtgcttgtgcgggatccatgtg---gccacgtgtcagatttttttgtaggtgttaaagggtgtattgc 26990294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 35785302 - 35785228
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| || |||||| |||| || |||||   ||||||||||||||||| ||||||||| ||||||||||    
T  35785302 aagagaaagtgtgattgtgcgggatccacgtaactac---gtgtcagatttttgtgtgggtgtcaaaaggtgtattgc 35785228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 35943889 - 35943963
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| || ||| |||| || ||||   |||||||||||||||||| ||||||||||| ||||||||    
T  35943889 aagagaaagtgtgcttgtgtgggatccacgtaacta---cgtgtcagatttttgtgtgggtgtcaaatgatgtattgc 35943963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 31009088 - 31009032
Alignment:
Q  4 agaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgt 63  Q
    ||||||||||||| |||||| |||| ||||||||   ||||||||||||||||| |||||    
T  31009088 agaaagtgtgcttgtgcgggatccacgtgactac---gtgtcagatttttgtgtgggtgt 31009032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 48183046 - 48183120
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||||||   |||||||||||||||||| ||||||||| ||||||||||    
T  48183046 aagagaaagtgtgcttgtgcggggtccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaagggtgtattgc 48183120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 50052425 - 50052499
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||||||   |||||||||||||||||| ||||||||| ||||||||||    
T  50052425 aagagaaagtgtgcttgtgcggggtccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaagggtgtattgc 50052499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11511459 - 11511533
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||||||   |||||||||||||| ||| ||||||||| ||||||||||    
T  11511459 aagagaaagtgtgcttgtgcggggtccacgtgacta---cgtgtcagatttttatgtgggtgtcaaagggtgtattgc 11511533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 29234242 - 29234316
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||||||   ||||||||||||||||| |||| ||||| ||||||||||    
T  29234242 aagagaaagtgtgcttgtgcggggtccacgtgacta---cgtgtcagatttttgtgaaggtatcaaagggtgtattgc 29234316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41236450 - 41236376
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| ||||||||   ||||||||||||||||| | ||||||| ||||||||||    
T  41236450 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtggatgtcaaaaggtgtattgc 41236376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 480444 - 480517
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||| | ||||||||| |||||||   |||||||||||||||||| ||||||||| |||||||||    
T  480444 aagagaaagtgtgcttgtacggggtccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaagggtgtattg 480517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 54473530 - 54473603
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||| ||||||||||| ||||||||||| ||||||||   |||| |||||||||||| |||||||||||||||||||    
T  54473530 aagataaagtgtgcttgtgcggggtccacgtgactac---gtgttagatttttgtgtgggtgtcaaatggtgtattg 54473603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 41823985 - 41823926
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgt 63  Q
    |||||||||||||||| ||||||||||||||||   ||||||||||||||||||||| |||||    
T  41823985 aagagaaagtgtgcttgtgcggggtccatgtga---ctacgtgtcagatttttgtgtgggtgt 41823926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6034147 - 6034073
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||| |||| ||||||||    |||||||||||||||| ||||||||| ||||||||||    
T  6034147 aagagaaagtgtgcttgtgcgggatccacgtgactaca---tgtcagatttttgtgtgggtgtcaaagggtgtattgc 6034073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29239989 - 29239915
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| || |||||||| ||||||||   |||| |||||||||||| | ||||||||||||||||||    
T  29239989 aagagaaagtgtgcttgtgtggggtccacgtgactac---gtgttagatttttgtgtggatgtcaaatggtgtattgc 29239915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23608338 - 23608265
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||| || || || || ||||||||   ||||||||||||||||| |||||||||||||||||||    
T  23608338 aagagaaagtgtgcttgtgtggagttcacgtgactac---gtgtcagatttttgtgtgggtgtcaaatggtgtattg 23608265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31910295 - 31910222
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||| |||||||||||||||    ||| ||||||||||||||||| |||||||||  ||||||||    
T  31910295 aagagaaagtgtgcttgtgcggggtccatgtg---gctatgtgtcagatttttgtgtgggtgtcaaagagtgtattg 31910222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42044364 - 42044423
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgt 63  Q
    |||||||||||||||| ||||||||||| |||   |||||||||||||||||||||| |||||    
T  42044364 aagagaaagtgtgcttgtgcggggtccacgtg---actacgtgtcagatttttgtgtgggtgt 42044423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 3481757 - 3481683
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| || |||||||| |||||||    ||||||||||||||||| |||||||||  |||||||||    
T  3481757 aagagaaagtgtgcttgtgtggggtccacgtgactat---gtgtcagatttttgtgtgggtgtcaaagagtgtattgc 3481683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 24995104 - 24995178
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||| ||||||| ||||||||||| |||||||   ||||||| |||||| ||| ||||||||| ||||||||||    
T  24995104 aagagaaaatgtgcttgtgcggggtccacgtgacta---cgtgtcaaatttttatgtgggtgtcaaagggtgtattgc 24995178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29977988 - 29977914
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| || ||||||||| |||||||   ||||||||||||||||| ||||| ||  ||||||||||    
T  29977988 aagagaaagtgtgcttgtgtggggtccatatgactac---gtgtcagatttttgtgtgggtgttaaggggtgtattgc 29977914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 50526203 - 50526242
Alignment:
Q  39 acgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  50526203 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgc 50526242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 55475294 - 55475220
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||| ||||||| |||||||| || | ||    |||||||||||||||| ||||||||| ||||||||||    
T  55475294 aagagaaagtgtacttatgcagggtccatatggccaca---tgtcagatttttgtgtgggtgtcaaagggtgtattgc 55475220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 40574846 - 40574810
Alignment:
Q  40 cgtgtcagatttttgtgtaggtgtcaaatggtgtatt 76  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  40574846 cgtgtcagatttttgtgtgggtgtcaaagggtgtatt 40574810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 53352563 - 53352622
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgt 63  Q
    |||||||||| ||||| |||||||||||  |    ||||||||||||||||||||||||||||    
T  53352563 aagagaaagtatgcttgtgcggggtccactt---aactacgtgtcagatttttgtgtaggtgt 53352622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 33644303 - 33644229
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  33644303 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 33644229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 53982114 - 53982040
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  53982114 aagagaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 53982040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 31456792 - 31456718
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||||||||  |||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  31456792 aagagaaagtgtgcttgtgcggggtccacatgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 31456718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 52629403 - 52629329
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| | ||||||||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  52629403 aagagaaagtgtgcttgtacggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 52629329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 27714888 - 27714960
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtatt 76  Q
    |||||||||||||||| |||||||||||  ||||||   |||||||||||||||||| ||||||||| ||||||||    
T  27714888 aagagaaagtgtgcttgtgcggggtccacatgacta---cgtgtcagatttttgtgtgggtgtcaaagggtgtatt 27714960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8076496 - 8076426
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgta 74  Q
    |||||||||||||||| ||||||||||| |||   ||||||||| |||||||||||| ||||||||| ||||||    
T  8076496 aagagaaagtgtgcttgtgcggggtccacgtg---actacgtgttagatttttgtgtgggtgtcaaagggtgta 8076426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 17470508 - 17470434
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| || |||||||| ||||||||   ||||||||||||||||| ||||| ||| ||||||||||    
T  17470508 aagagaaagtgtgcttgtgtggggtccacgtgactac---gtgtcagatttttgtgtgggtgttaaaaggtgtattgc 17470434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 26141529 - 26141603
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| || |||||||||||||| ||   ||||||||||||||||| ||||| ||| ||||||||||    
T  26141529 aagagaaagtgtgcttgtgtggggtccatgtgaccac---gtgtcagatttttgtgtgggtgttaaagggtgtattgc 26141603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 48587088 - 48587162
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||| ||| |||||| |||| |||||||   |||||||||||||| ||||||||||||| ||||||||||    
T  48587088 aagagaaagtgtacttgtgcgggatccacgtgacta---cgtgtcagatttttatgtaggtgtcaaagggtgtattgc 48587162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 49607517 - 49607443
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| || ||| |||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  49607517 aagagaaagtgtgcttgtgtgggatccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 49607443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 54868892 - 54868966
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| || ||||||||||| || ||||   |||||||||||||||||| ||||||||| ||||||||||    
T  54868892 aagagaaagtgtgattgtgcggggtccacgtaacta---cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgc 54868966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11095352 - 11095424
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| ||||||||||| | ||     |||||||||||||||||||||| ||||||||| ||||||||||    
T  11095352 aagagaaagtgtgtttatgcggggtacgtg-----actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgc 11095424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 41189761 - 41189835
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||||||||||||    | |||||||| |||||| ||| ||||||||||| ||||||||    
T  41189761 aagagaaagtgtgcttgtgcggggtccatgtg---gccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgc 41189835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 11347919 - 11347992
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||||||| |||||||||||    | ||||||||||||||||||| | ||||||| | |||||||    
T  11347919 aagagaaagtgtgcttatgcagggtccatgtg---gccacgtgtcagatttttgtgtggatgtcaaaggatgtattg 11347992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26754798 - 26754724
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||| ||||||| |||||||||||||||   || || |||||||||||||||| | |||| || ||||||||||    
T  26754798 aagagaaaatgtgcttgtgcggggtccatgtg---accacatgtcagatttttgtgtggatgtccaagggtgtattgc 26754724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33118848 - 33118921
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    ||||||||||||| || || ||| |||| |||||||   ||||||| |||||||||| ||||||||| |||||||||    
T  33118848 aagagaaagtgtgtttctgagggatccacgtgacta---cgtgtcaaatttttgtgtgggtgtcaaagggtgtattg 33118921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 51419357 - 51419430
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||| ||||||||| |||||    | ||||||||||||||||||| ||||| ||| | |||||||    
T  51419357 aagagaaagtgtgcttgtgcggggtctatgtg---gccacgtgtcagatttttgtgtgggtgttaaaggatgtattg 51419430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 20764912 - 20764984
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtatt 76  Q
    |||||||||||||||| | |||||||||||||    | ||||||||||||||||||| ||||| |||  |||||||    
T  20764912 aagagaaagtgtgcttgtacggggtccatgtg---gccacgtgtcagatttttgtgtgggtgttaaagagtgtatt 20764984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 36707453 - 36707494
Alignment:
Q  36 actacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||||||||| | ||||||| |||||||||    
T  36707453 actacgtgtcagatttttgtgtggatgtcaaagggtgtattg 36707494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 8346385 - 8346459
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||| ||||||| |||||||   |||||||||||||||||| ||||||||||||||||||||    
T  8346385 aagagaaagtgtgcttgtgcagggtccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaatggtgtattgc 8346459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 44548373 - 44548447
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||||||   |||||||||||||||||| ||| ||||||||||||||||    
T  44548373 aagagaaagtgtgcttgtgcggggtccacgtgacta---cgtgtcagatttttgtgtgggtatcaaatggtgtattgc 44548447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 2582015 - 2581944
Alignment:
Q  4 agaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| ||||||||||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  2582015 agaaagtgtgcttgtgcggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 2581944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 3000422 - 3000348
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| | ||||||||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  3000422 aagagaaagtgtgcttgtacggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 3000348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 9474873 - 9474947
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| || ||||||||||| |||||||   |||||||||||||||||| ||||||||| ||||||||||    
T  9474873 aagagaaagtgtgtttgtgcggggtccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaagggtgtattgc 9474947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 27564732 - 27564806
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||| |||   ||||||||||||||||| ||||||||| ||||||||||    
T  27564732 aagagaaagtgtgcttgtgcggggtccacgtgattac---gtgtcagatttttgtgtgggtgtcaaaaggtgtattgc 27564806  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 32813350 - 32813276
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| |||||||||||||||   || ||||||||||||||||||| ||||| ||| ||||||||||    
T  32813350 aagagaaagtgtgcttgtgcggggtccatgtg---accacgtgtcagatttttgtgtgggtgttaaagggtgtattgc 32813276  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 38595257 - 38595183
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| | ||||||||| ||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  38595257 aagagaaagtgtgcttgtacggggtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaagggtgtattgc 38595183  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41758908 - 41758834
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| || ||||||||||||||||||||   ||||||||||||||||| | ||||||| ||||||||||    
T  41758908 aagagaaagtgtgtttgtgcggggtccatgtgactac---gtgtcagatttttgtgtggttgtcaaagggtgtattgc 41758834  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 48716279 - 48716353
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||| ||||||||||| ||||||||||| |||||||   |||||||||||||||||| | ||||||||||||||||||    
T  48716279 aagataaagtgtgcttgtgcggggtccacgtgacta---cgtgtcagatttttgtgtggatgtcaaatggtgtattgc 48716353  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 51898683 - 51898754
Alignment:
Q  4 agaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||| |||||| |||| |||||||   |||||||||||||||||| ||||||||| ||||||||||    
T  51898683 agaaagtgtgcttgtgcgggatccacgtgacta---cgtgtcagatttttgtgtgggtgtcaaagggtgtattgc 51898754  T

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Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43235 - 43162
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||| ||||| ||||| ||||||||   ||||||||||||||||| ||||||||| | |||||||    
T  43235 aagagaaagtgtgcttgtgcggagtccacgtgactac---gtgtcagatttttgtgtgggtgtcaaaggatgtattg 43162  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 26440837 - 26440764
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    ||||||||||||||||||||||| ||||||||    | ||||||||||||||||||| ||||| ||| |||||||||    
T  26440837 aagagaaagtgtgcttatgcgggatccatgtg---gccacgtgtcagatttttgtgtgggtgttaaagggtgtattg 26440764  T

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Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 47452317 - 47452389
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtatt 76  Q
    |||||||||||||||| |||||| |||| ||||||||   |||| |||||||||||| ||||||||| ||||||||    
T  47452317 aagagaaagtgtgcttgtgcgggatccacgtgactac---gtgttagatttttgtgtgggtgtcaaagggtgtatt 47452389  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 38632318 - 38632392
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||| ||||||||||| ||||||||||| |||||||   |||||||||||||||||| | ||| ||| ||||||||||    
T  38632318 aagaaaaagtgtgcttgtgcggggtccacgtgacta---cgtgtcagatttttgtgtggatgttaaaaggtgtattgc 38632392  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 45044557 - 45044631
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||| |||| || ||||||||||||||| ||||    |||||||||||||| | ||||||||||||||||||||    
T  45044557 aagagaaaatgtgtttgtgcggggtccatgtggctaca---tgtcagatttttgtatgggtgtcaaatggtgtattgc 45044631  T

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Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 50630561 - 50630487
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||||||| ||||||||||| |||   |||||||||||||||||||||| |||  |||| | ||||||||    
T  50630561 aagagaaagtgtgcttgtgcggggtccacgtg---actacgtgtcagatttttgtgtgggtaacaaaggatgtattgc 50630487  T

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Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13414864 - 13414791
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||| ||||||| || |||||||| ||||||||   |||| |||||||||||| ||||||||| |||||||||    
T  13414864 aagagaaaatgtgcttgtgtggggtccacgtgactac---gtgttagatttttgtgtgggtgtcaaagggtgtattg 13414791  T

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Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 49811524 - 49811597
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattg 77  Q
    |||||||||||||||| ||||| ||| || ||    ||||||||||||||||||||| | |||||||||||||||||    
T  49811524 aagagaaagtgtgcttgtgcggagtctatatg---gctacgtgtcagatttttgtgtggatgtcaaatggtgtattg 49811597  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 5958997 - 5959071
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    |||||||||||| ||| |||||||||||| |||| ||    |||||||||||||||| ||||||||  ||||||||||    
T  5958997 aagagaaagtgtacttgtgcggggtccatatgaccaca---tgtcagatttttgtgtgggtgtcaagaggtgtattgc 5959071  T

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Target: scaffold0237 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4132 - 4058
Alignment:
Q  1 aagagaaagtgtgcttatgcggggtccatgtgactactacgtgtcagatttttgtgtaggtgtcaaatggtgtattgc 78  Q
    ||||||||||||||||||||||| |||| || |||||   ||||||||||||||||| ||||| ||| ||||||||||    
T  4132 aagagaaagtgtgcttatgcgggatccacgtaactac---gtgtcagatttttgtgtgggtgttaaaaggtgtattgc 4058  T

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