View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2232_low_19 (Length: 310)

Name: NF2232_low_19
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2232_low_19
NF2232_low_19
[»] chr4 (9 HSPs)
chr4 (44-296)||(31502117-31502369)
chr4 (44-296)||(31476995-31477247)
chr4 (48-262)||(31496982-31497196)
chr4 (135-261)||(31482887-31483010)
chr4 (133-266)||(31019687-31019817)
chr4 (133-266)||(31029568-31029698)
chr4 (133-273)||(31159136-31159273)
chr4 (220-266)||(31489729-31489775)
chr4 (222-278)||(31033954-31034010)
[»] chr6 (11 HSPs)
chr6 (48-266)||(33642653-33642871)
chr6 (53-280)||(33273608-33273835)
chr6 (48-266)||(33402425-33402643)
chr6 (48-264)||(33264460-33264676)
chr6 (48-266)||(33411764-33411982)
chr6 (48-266)||(31567179-31567397)
chr6 (134-266)||(33059460-33059592)
chr6 (48-266)||(9168585-9168803)
chr6 (48-266)||(33306297-33306515)
chr6 (48-266)||(33389883-33390101)
chr6 (44-73)||(13609377-13609406)
[»] scaffold0428 (1 HSPs)
scaffold0428 (48-264)||(8571-8787)
[»] chr2 (1 HSPs)
chr2 (48-266)||(17438879-17439097)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 44 - 296
Target Start/End: Complemental strand, 31502369 - 31502117
Alignment:
Q  44 ccagttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatat 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31502369 ccagttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatat 31502270  T
Q  144 ttgattgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaa 243  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31502269 ttgattgtgttcttcaccgtgtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaa 31502170  T
Q  244 caacatgcaccaaattgatgagaaattctatcatatagaaccctaccaagggt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31502169 caacatgcaccaaattgatgagaaattctatcatatagaaccctaccaagggt 31502117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 44 - 296
Target Start/End: Complemental strand, 31477247 - 31476995
Alignment:
Q  44 ccagttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatat 143  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||| ||||||||||||||    
T  31477247 ccagttgttcaactttatcaacattatcaaaaatcataaggaccctttgacgacatagtctacgtctaatcaagttagatgcagtggaaagattgcatat 31477148  T
Q  144 ttgattgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaa 243  Q
     |||||||| | |||||| || ||||||| ||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  31477147 ctgattgtgattttcaccgagagtttgatgtagaatttgcttttgaacatcgagtggcccatcatgtaatctaaacattttgcttacatcatcaataaaa 31477048  T
Q  244 caacatgcaccaaattgatgagaaattctatcatatagaaccctaccaagggt 296  Q
    || ||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  31477047 cagcatgcaccaaattgatgagaaattctatcatatagaaccatgccaagggt 31476995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 48 - 262
Target Start/End: Complemental strand, 31497196 - 31496982
Alignment:
Q  48 ttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatatttga 147  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||| ||||||||||||||  |   |||||||||||| |||    
T  31497196 ttgttcaactttatcaacattatcaaaaatcaaaaggatactttgacaacatagcctgcgtcgtatcaagttagatgcgatgtgaagattgcatatatga 31497097  T
Q  148 ttgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaac 247  Q
    | ||||||||||   || ||||||| ||| |||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||| |||||||| |    
T  31497096 tggtgttcttcattgagagtttgatgtagaatttgcttttgaacattgagtggtccatcatgtaatctaaaaattttgcttacatcatcaataaaacatc 31496997  T
Q  248 atgcaccaaattgat 262  Q
    ||||| |||||||||    
T  31496996 atgcatcaaattgat 31496982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 261
Target Start/End: Complemental strand, 31483010 - 31482887
Alignment:
Q  135 attgcatatttgattgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatca 234  Q
    |||| |||| ||| ||||||||||||| || ||||||| ||| |||||||||||  |||||| ||| || | ||   |||||||  ||||||||||||||    
T  31483010 attgtatatctgaatgtgttcttcacctagagtttgatgtagaatttgcttttgtgcaccaactggaccgtaat---atctaaattttttgcttacatca 31482914  T
Q  235 tcgataaaacaacatgcaccaaattga 261  Q
    || |||||||| |||||| | ||||||    
T  31482913 tcaataaaacagcatgcatcgaattga 31482887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 31019687 - 31019817
Alignment:
Q  133 agattgcatatttgattgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacat 232  Q
    ||||||||||| |||  |||||| |  ||||| ||||| | ||| |||||||||||  |||||| | | |||||||||   ||| | |||||||||| ||    
T  31019687 agattgcatatctgaaagtgttccttgccaagagtttggtgtagaatttgcttttgtgcaccaacttgaccatcatgt---ctatatattttgcttagat 31019783  T
Q  233 catcgataaaacaacatgcaccaaattgatgaga 266  Q
    |||| |||||||||| |||| |||||||||||||    
T  31019784 catcaataaaacaacgtgcatcaaattgatgaga 31019817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 266
Target Start/End: Original strand, 31029568 - 31029698
Alignment:
Q  133 agattgcatatttgattgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacat 232  Q
    ||||||||||| |||  |||||| |  ||||  ||||| | ||| |||||||||||  |||||| | | |||||||||   ||| | |||||||||| ||    
T  31029568 agattgcatatctgaaagtgttccttgccaaaagtttggtgtagaatttgcttttgtgcaccaacttgaccatcatgt---ctatatattttgcttagat 31029664  T
Q  233 catcgataaaacaacatgcaccaaattgatgaga 266  Q
    |||| |||||||||| |||| |||||||||||||    
T  31029665 catcaataaaacaacgtgcatcaaattgatgaga 31029698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 273
Target Start/End: Original strand, 31159136 - 31159273
Alignment:
Q  133 agattgcatatttgattgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacat 232  Q
    |||||| ||||||||  ||||||  | ||||| ||||| | ||| |||||||||||  |||||| ||| ||||||||   |||| | ||| |||||| ||    
T  31159136 agattgtatatttgaaagtgttccccgccaagagtttggtgtaggatttgcttttgtgcaccaattggaccatcatg---tctatatattctgcttagat 31159232  T
Q  233 catcgataaaacaacatgcaccaaattgatgagaaattcta 273  Q
    |||| |||||||||| | || ||||| ||||||| ||||||    
T  31159233 catcaataaaacaacgtacatcaaatcgatgagagattcta 31159273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 31489775 - 31489729
Alignment:
Q  220 attttgcttacatcatcgataaaacaacatgcaccaaattgatgaga 266  Q
    |||||||||| |||||| |||||||||| |||| |||||||||||||    
T  31489775 attttgcttagatcatcaataaaacaacgtgcatcaaattgatgaga 31489729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 31033954 - 31034010
Alignment:
Q  222 tttgcttacatcatcgataaaacaacatgcaccaaattgatgagaaattctatcata 278  Q
    |||||||| ||||||||| || || |||||| ||||||||||||| ||||| |||||    
T  31033954 tttgcttatatcatcgatgaagcagcatgcatcaaattgatgagagattctgtcata 31034010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 266
Target Start/End: Complemental strand, 33642871 - 33642653
Alignment:
Q  48 ttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatatttga 147  Q
    ||||||||||| |||||||||||||| ||||| |||| || | | ||||| |||||| ||||| ||||| | || |||  |   | ||||||||||||||    
T  33642871 ttgttcaacttgatcaacattatcaagaatcagaagggccttctcacgacgtagcctacgtcgtatcaaatcagttgccatgttacgattgcatatttga 33642772  T
Q  148 ttgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaac 247  Q
    | |||||||   ||||| |||||| |||| |||||||||||  |  | ||||| ||||||||||||||| | ||||||||||||||||| ||||||||      
T  33642771 tggtgttctatgccaagagtttgaaataggatttgcttttgtgcttcgagtggaccatcatgtaatctataaattttgcttacatcatcaataaaacatg 33642672  T
Q  248 atgcaccaaattgatgaga 266  Q
    |||||| |||| |||||||    
T  33642671 atgcactaaatcgatgaga 33642653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 280
Target Start/End: Original strand, 33273608 - 33273835
Alignment:
Q  53 caactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatatttgattgtg 152  Q
    |||||| ||| |||||||||| ||||| ||||||||||| |||||||||||| | ||| ||||| |||| | |  |  || ||||||||||||||| |||    
T  33273608 caacttgatccacattatcaagaatcagaaggaccctttcacgacatagcctacttcgtatcaaattagttacgctgtaatgattgcatatttgatggtg 33273707  T
Q  153 ttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaacatgca 252  Q
    ||||   || || ||||||  ||| |||||||||||  || | || || |||||||||||| || | ||||||||||||||||| ||||||||  |||||    
T  33273708 ttctatgccgagagtttgaagtaggatttgcttttgtgcatcgaggggaccatcatgtaatttataaattttgcttacatcatctataaaacaggatgca 33273807  T
Q  253 ccaaattgatgagaaattctatcatata 280  Q
    | |||| ||||||| |||  ||||||||    
T  33273808 ctaaatcgatgagatatttgatcatata 33273835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 266
Target Start/End: Original strand, 33402425 - 33402643
Alignment:
Q  48 ttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatatttga 147  Q
    ||||||||||| ||| |||||||||||||||| |||  || ||| ||||| |||||| ||| | ||||| | |  |||| |  || ||||||||||||||    
T  33402425 ttgttcaacttgatccacattatcaaaaatcagaagagccttttcacgacgtagcctacgttgtatcaaatcaattgcactgtaacgattgcatatttga 33402524  T
Q  148 ttgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaac 247  Q
    | |||||||   || || ||||||| ||| |||||||||||  || ||| ||| ||||||| ||||||| | ||||||||||||||||| || |||||      
T  33402525 tggtgttctatgccgagagtttgatgtaggatttgcttttgtgcatcaattgggccatcatataatctataaattttgcttacatcatcaatgaaacagg 33402624  T
Q  248 atgcaccaaattgatgaga 266  Q
    |||||| |||| |||||||    
T  33402625 atgcactaaatcgatgaga 33402643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 264
Target Start/End: Original strand, 33264460 - 33264676
Alignment:
Q  48 ttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatatttga 147  Q
    ||||||||||| ||| |||||||||| ||| | ||||  | ||| ||||| ||||||   ||  ||||| | || |||| || || ||||||||||||||    
T  33264460 ttgttcaacttgatccacattatcaagaattagaagggtcttttcacgacttagcctatttcttatcaaatcagttgcactataatgattgcatatttga 33264559  T
Q  148 ttgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaac 247  Q
    | |||||||   ||||| ||||||| ||| |||||||||||  || | | ||| ||||||||||||||||| ||||||||||||||||| || |||||      
T  33264560 tggtgttctatgccaagagtttgatgtaggatttgcttttgtgcatctattggaccatcatgtaatctaaaaattttgcttacatcatcaatgaaacagg 33264659  T
Q  248 atgcaccaaattgatga 264  Q
    ||||| ||||| |||||    
T  33264660 atgcatcaaatcgatga 33264676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 266
Target Start/End: Original strand, 33411764 - 33411982
Alignment:
Q  48 ttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatatttga 147  Q
    ||||||||||| ||| |||||||||||||||| |||| || ||| | ||| || ||| ||||| ||||| | || |||| |  || ||||||||||||||    
T  33411764 ttgttcaacttgatccacattatcaaaaatcagaagggccttttcatgacgtaacctacgtcgtatcaaatcagttgcactgtaacgattgcatatttga 33411863  T
Q  148 ttgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaac 247  Q
    | |||||||   || |  ||||||  ||| |||||| ||||  || | || || ||||||| ||||||| | |||||||||||||| || |||||||||     
T  33411864 tggtgttctatgccgacagtttgaagtaggatttgcctttgtgcatcgaggggaccatcatataatctataaattttgcttacatcgtctataaaacaag 33411963  T
Q  248 atgcaccaaattgatgaga 266  Q
    |||||| ||||||||||||    
T  33411964 atgcactaaattgatgaga 33411982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 266
Target Start/End: Complemental strand, 31567397 - 31567179
Alignment:
Q  48 ttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatatttga 147  Q
    ||||||||||| ||| ||||| |||| ||||| |||| |||||| |||||||||||| | ||| ||||| ||||  ||  |  || |||||||||||||     
T  31567397 ttgttcaacttgatctacattttcaagaatcagaagggccctttcacgacatagccttcttcgtatcaaattagtggcgctgtaatgattgcatatttgt 31567298  T
Q  148 ttgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaac 247  Q
    | ||| |||   ||||  ||||||  ||| |||||||||||  || | || || ||||||| | ||||| | ||||||||||||||||| ||| |||||     
T  31567297 tggtgatctatgccaacagtttgaagtaggatttgcttttgtgcatcgaggggaccatcatatgatctataaattttgcttacatcatcaatataacaag 31567198  T
Q  248 atgcaccaaattgatgaga 266  Q
    |||||| |||| |||||||    
T  31567197 atgcactaaatcgatgaga 31567179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 33059460 - 33059592
Alignment:
Q  134 gattgcatatttgattgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatc 233  Q
    ||||||||||||| | |||||||   || || |||||| |||| ||||| ||||| ||| | |||||  |||||||||||| | | |||||| |||||||    
T  33059460 gattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatc 33059559  T
Q  234 atcgataaaacaacatgcaccaaattgatgaga 266  Q
     || ||||||||| |||||| ||||||||||||    
T  33059560 gtcaataaaacaagatgcactaaattgatgaga 33059592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 266
Target Start/End: Original strand, 9168585 - 9168803
Alignment:
Q  48 ttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatatttga 147  Q
    ||||||||||| |||||||||||||| |||||  ||| |||||| |||||||||  | ||||  ||||| || |  ||| |  |  ||||||||||||||    
T  9168585 ttgttcaacttgatcaacattatcaagaatcaggagggccctttcacgacatagtatacgtcatatcaaatttgtggcactgtagcgattgcatatttga 9168684  T
Q  148 ttgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaac 247  Q
    | |||||||   || || ||||||  ||  |||||||||||  || | ||||| |||||||| |||||| | ||||| |||| |||||| ||||||||      
T  9168685 tggtgttctatgccgagagtttgaagtaagatttgcttttgtgcatcgagtgggccatcatgcaatctataaattttacttatatcatcaataaaacagg 9168784  T
Q  248 atgcaccaaattgatgaga 266  Q
    |||||| |||| |||||||    
T  9168785 atgcactaaatcgatgaga 9168803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 266
Target Start/End: Original strand, 33306297 - 33306515
Alignment:
Q  48 ttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatatttga 147  Q
    ||||||||||| ||  |||||||||| ||||| ||||||| ||| ||||| |||||| ||||| ||||| | || |||  |  || |||||| |||| ||    
T  33306297 ttgttcaacttcattgacattatcaagaatcagaaggaccttttcacgacgtagcctacgtcgtatcaaatcagttgcgttgtaacgattgcttattaga 33306396  T
Q  148 ttgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaac 247  Q
    | |||||||   || || |||||| |||| |||||||||||  ||   ||||| ||||||||||| ||| | |||||| |||||||||| ||| | ||      
T  33306397 tggtgttctatgcctagagtttgaaataggatttgcttttgtgcattgagtggaccatcatgtaaactataaattttggttacatcatcaatatagcagg 33306496  T
Q  248 atgcaccaaattgatgaga 266  Q
    |||||| |||| |||||||    
T  33306497 atgcactaaatcgatgaga 33306515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 266
Target Start/End: Original strand, 33389883 - 33390101
Alignment:
Q  48 ttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatatttga 147  Q
    ||||||| ||| ||| |||||||||| |||||  |||  | ||| ||||| |||||| ||||| ||||| | || |||| |  || ||||||||||||||    
T  33389883 ttgttcaccttgatccacattatcaagaatcactagggtcttttcacgacttagcctacgtcgtatcaaatcagttgcaatgtaacgattgcatatttga 33389982  T
Q  148 ttgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaac 247  Q
    | ||||| |    | || |||||| |||| |||||||||||  || | |  || ||||||  ||||||| | ||||||||||||||||| |||||||||     
T  33389983 tggtgttttatgtcgagagtttgaaatagaatttgcttttgtgcatccaaaggaccatcacataatctatatattttgcttacatcatcaataaaacaat 33390082  T
Q  248 atgcaccaaattgatgaga 266  Q
     ||||| |||| |||||||    
T  33390083 ttgcactaaatcgatgaga 33390101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 13609406 - 13609377
Alignment:
Q  44 ccagttgttcaactttatcaacattatcaa 73  Q
    ||||||||||||||||||||||||||||||    
T  13609406 ccagttgttcaactttatcaacattatcaa 13609377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 264
Target Start/End: Original strand, 8571 - 8787
Alignment:
Q  48 ttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatatttga 147  Q
    ||||||||||| ||| |||||||||| ||| | ||||  | ||| ||||| ||||||  |||  ||||| | || |||| || || ||||||||||||||    
T  8571 ttgttcaacttgatccacattatcaagaattagaagggtcttttcacgacttagcctatgtcttatcaaatcagttgcactataatgattgcatatttga 8670  T
Q  148 ttgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaac 247  Q
    | |||||||   ||||| ||||||| ||| |||||||||||  || ||| ||| ||||||||||||||||| ||||||||||||||||| || |||||      
T  8671 tggtgttctatgccaagagtttgatgtaggatttgcttttgtgcatcaattggaccatcatgtaatctaaaaattttgcttacatcatcaatgaaacagg 8770  T
Q  248 atgcaccaaattgatga 264  Q
    ||||| ||||| |||||    
T  8771 atgcatcaaatcgatga 8787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 266
Target Start/End: Complemental strand, 17439097 - 17438879
Alignment:
Q  48 ttgttcaactttatcaacattatcaaaaatcaaaaggaccctttgacgacatagcctgcgtcgaatcaagttagatgcagtagaaagattgcatatttga 147  Q
    ||||||||||| ||| |||||||||| ||||| |||  |||||| | ||||||| ||  | || ||||| |  | |||| |  || ||||||||||||||    
T  17439097 ttgttcaacttgatccacattatcaagaatcagaagtgccctttcatgacatagtctatgccgtatcaaatatgttgcactgtaacgattgcatatttga 17438998  T
Q  148 ttgtgttcttcaccaagtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatcatcgataaaacaac 247  Q
    | |||||||   ||||| |||||| |||  |||||||||||  |  ||||||| ||||||||||||||| | ||||||||||||||||| || ||||||     
T  17438997 tggtgttctatgccaagagtttgaaatatgatttgcttttgtgcttcaagtggaccatcatgtaatctataaattttgcttacatcatcaatgaaacaag 17438898  T
Q  248 atgcaccaaattgatgaga 266  Q
    ||||| ||||| |||||||    
T  17438897 atgcatcaaatcgatgaga 17438879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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