View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232_low_2 (Length: 594)
Name: NF2232_low_2
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 44853039 - 44853370
Alignment:
| Q |
16 |
atgtaaaacttaaaaaacattcgctatatataccaggggatccaattcagctcaacacatgagaatgagtatccatgcaaaacattttacagcttgtagc |
115 |
Q |
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| T |
44853039 |
atgtaaaacttaaaaaacattcgctatatataccaggggatccaattcagctcaacacatgagaatgagtatccatgcaaaacattttacagcttgtagc |
44853138 |
T |
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| Q |
116 |
tcttagtagcactacaaattataatgtaattagtttcatacataaatttcctatattgatgtagaaagcnnnnnnntcactttaatgaaactataaatct |
215 |
Q |
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| T |
44853139 |
tcttagtagcactacaaattataatgtaattagtttcatacataaatttcctatattgatgtagaaagcaaaaaaatcactttaatgaaactataaatct |
44853238 |
T |
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| Q |
216 |
caatccaatccaacaaagtcttgacnnnnnnngaaacatgatattgtaaatctggaaaatgcattataatcagagagtctatatcattgaattttttaaa |
315 |
Q |
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| T |
44853239 |
caatccaatccaacaaagtcttgac-aaaaaagaaacatgatattgtaaatctggaaaatgcattataatcagagagtctatatcattgaattttttaaa |
44853337 |
T |
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| Q |
316 |
acttgagtataacgtgtgaagtagagattagct |
348 |
Q |
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| T |
44853338 |
acttgagtataacgtgtgaagtagagattagct |
44853370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 351 - 576
Target Start/End: Original strand, 44853421 - 44853645
Alignment:
| Q |
351 |
cacactgacacgtacacgcagacacaaccctaaaacgtcaacagtgataattatttaaagggaaatgctaacaagtgccccgggcactggttagcaagaa |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44853421 |
cacactgacacgtacacgcagacacaaccctaaaacgtcaacacttataattatttaaagggaaatgctaacaagtgccccgggcaccggttagcaagaa |
44853520 |
T |
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| Q |
451 |
cctttnnnnnnntatacatacaattgaatataattcacatttggacactgacacgtgtcaaacatcgaacacattttcaatcagaagtgtcgggtgtaac |
550 |
Q |
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| T |
44853521 |
cctttaaaaaaatatacatacaattgaatataattcacatttggacactgacatgtgtcaaacatcgaacacattttcaatcagaagtgtc-ggtgtaac |
44853619 |
T |
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| Q |
551 |
cgagcttaacgacactccattggcct |
576 |
Q |
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| T |
44853620 |
cgagcttaacgacactccattggcct |
44853645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 443
Target Start/End: Complemental strand, 3026198 - 3026160
Alignment:
| Q |
405 |
ttaaagggaaatgctaacaagtgccccgggcactggtta |
443 |
Q |
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| T |
3026198 |
ttaaagggaaatgctaactggtgccccgggcactggtta |
3026160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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