View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232_low_24 (Length: 250)
Name: NF2232_low_24
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 47 - 245
Target Start/End: Original strand, 24482316 - 24482514
Alignment:
| Q |
47 |
atgggagaaatgagttgcatggttgaacgaggaagctgcaggttcatgacatggacgcttggagtgtgtacgtctcattgcggtctttccaccagtgggt |
146 |
Q |
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| T |
24482316 |
atgggagaaatgagttgcatggttgaacgaggaagctgcaggttcatgacatggacgcttggagtgtgtacgtctcattgtagtctttccaccagtgggt |
24482415 |
T |
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| Q |
147 |
gaactactgctttcaaggagcaccaaatcctccttgttgatcgatgatgatggttgttgcttcacttttttcactgtgagatactcatgacaagaatca |
245 |
Q |
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| T |
24482416 |
gaactactgctttcaaggagcaccaaatcctccttgttgaccgatgatgatggttgttgcttcacttttttcactgtgagatactcatcacaagaatca |
24482514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 14150652 - 14150411
Alignment:
| Q |
8 |
agataatactattctgcatattctcccctatgaaagagaa--tgggagaaatgagttgcatggttgaacgaggaag-ctgcaggtt-catgacatggacg |
103 |
Q |
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| T |
14150652 |
agataatattattctgcatattctcttctacaaaggagaaaatgggagaaatgggttgcatggttgaacgaggtgggctgaaggttgcaagatgtggacg |
14150553 |
T |
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| Q |
104 |
cttggagtgtgtacgtctcattgcggtctttccaccagtgggtgaactactgctttcaaggagcaccaaatcctccttgttgatcgatgatgatggttgt |
203 |
Q |
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| T |
14150552 |
cttggtgcgtgtacgtctcattgtggtcttttcatgagcaggtgaactactgctttcaaggagcacaaaatcctccttgttgaccgatgatgatggttgt |
14150453 |
T |
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| Q |
204 |
tgcttcacttttttcactgtgagatactcatgacaagaatca |
245 |
Q |
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| T |
14150452 |
tgctccacttttttcactgtgagattctcatcacaagaatca |
14150411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 14151027 - 14151263
Alignment:
| Q |
11 |
taatactattctgcatattctcccctatgaaagag--aatgggagaaatgagttgcatggttgaacgaggaagctgcaggtt-catgacatggacgcttg |
107 |
Q |
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| T |
14151027 |
taatactattctgcatattctcccctacaaaagaggaaattggagaaatgagttgcatggttgaacgaggg-gctgaagcttgcaggacgtggacgcttg |
14151125 |
T |
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| Q |
108 |
gagtgtgtacgtctcattgcggtctttccaccagtgggtgaactactgctttcaaggagcaccaaatcctccttgttgatcgatgatgatggttgttgct |
207 |
Q |
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| T |
14151126 |
gagcgtgtacgtatcattgtggtctttttatgagtgggtgaactactgctttcatggagcacaaaatcctccttgtagactgatgatgatggttgttgct |
14151225 |
T |
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| Q |
208 |
tcacttttttcactgtgagatactcatgacaagaatca |
245 |
Q |
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| T |
14151226 |
ccacttttttcacagtgagattctcatctcaagaatca |
14151263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 52422077 - 52421838
Alignment:
| Q |
10 |
ataatactattctgcatattctcccctatgaaagagaa--tgggagaaatgagttgcatggttgaacga-ggaagctgcaggtt-catgacatggacgct |
105 |
Q |
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|||| ||||| ||||||||||||||||| |||||| | ||| |||||||||||||||||||||| || || ||||| ||||| || ||| |||||||| |
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| T |
52422077 |
ataacactatcctgcatattctcccctacaaaagaggaagtggaagaaatgagttgcatggttgaatgatgggagctgaaggttgcaagacgtggacgct |
52421978 |
T |
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| Q |
106 |
tggagtgtgtacgtctcattgcggtctttccaccagtgggtgaactactgctttcaaggagcaccaaatcctccttgttgatcgatgatgatggttgttg |
205 |
Q |
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| T |
52421977 |
tggagcgtgtacgtctcactgtggtcttttcacaagtgggtgaactattgcttttagggagcacaaaatcctccttgttgactgatgatgatggatgttg |
52421878 |
T |
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| Q |
206 |
cttcacttttttcactgtgagatactcatgacaagaatca |
245 |
Q |
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| T |
52421877 |
ctccacttttttcattgtaatattctcatcacgagaatca |
52421838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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