View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232_low_27 (Length: 244)
Name: NF2232_low_27
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 46121951 - 46122174
Alignment:
| Q |
1 |
taaagaaataacaatccataaaaatctaatgttttcttgctaaaatttaaatttaagattccacaaaatccaatttgttaaacaatccctcgaaattaga |
100 |
Q |
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| T |
46121951 |
taaagaaataacaatccataaaaatctaatgttttcttgctaaaattttactttaagatttcacaaaatccaatttgttaaacaatccctcgaaattaga |
46122050 |
T |
|
| Q |
101 |
tatannnnnnnnatcaacacaactttttttaaaatacaaatagtcttaattgaatnnnnnnnnntatcataaaaaataagctttttaaatcctgtaaatc |
200 |
Q |
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| T |
46122051 |
tatattttttttatcaacacaactttttttaaaatacaaatagtcttaattgaat-------------acaaaaaataagctttttaaatcctgtaaatc |
46122137 |
T |
|
| Q |
201 |
accaaataccatcctccgtttttaaaatttgtaccta |
237 |
Q |
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| T |
46122138 |
accaaattccatcccccgtttttaaaatttgtaccta |
46122174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 1152179 - 1152212
Alignment:
| Q |
64 |
caaaatccaatttgttaaacaatccctcgaaatt |
97 |
Q |
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| T |
1152179 |
caaaatccaatttattaaacaatccctcgaaatt |
1152212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 30385130 - 30385166
Alignment:
| Q |
61 |
ccacaaaatccaatttgttaaacaatccctcgaaatt |
97 |
Q |
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| T |
30385130 |
ccacaaaatccaatttattaaacaatccttcgaaatt |
30385166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 31067625 - 31067589
Alignment:
| Q |
61 |
ccacaaaatccaatttgttaaacaatccctcgaaatt |
97 |
Q |
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|||||||||||||||| ||||||||||| |||||||| |
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| T |
31067625 |
ccacaaaatccaatttattaaacaatccttcgaaatt |
31067589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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