View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232_low_3 (Length: 567)
Name: NF2232_low_3
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 13 - 552
Target Start/End: Original strand, 1801980 - 1802520
Alignment:
| Q |
13 |
aatatacatctattttataattttgatacatttaagtattattgtgccaacattttatacatttaaaaatgaaaatatataattgttttagtttatggat |
112 |
Q |
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| T |
1801980 |
aatatacatctattttataattttgatacatttaagtattattgtgccaacattttatacatttaaaaatgaaaatatataattgttttagttcatggat |
1802079 |
T |
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| Q |
113 |
gcacagaagaacttaggacacaagatagcaaaatcttattattaaataaatcctgcccctagagaactttacgaccttcgaaa-ggggtatccctacgta |
211 |
Q |
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| T |
1802080 |
acaaagaagaacttaggacacaagatagcaaaatcttattattaaataaatcctgcccctagagaactttacgaccttcgaaaaggggtatccctacgta |
1802179 |
T |
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| Q |
212 |
aagtgagccagcctagaaaagacaaacatgtaaatatgagggattacggtcttatcgacattgacagcaaaatctacatttcttacatacaatagtccac |
311 |
Q |
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| T |
1802180 |
aagtgagccagcctagaaaagacaaacatgtaaatatgagggattacggtcttatcgacattgacagcaaaatctacatttcttacatacaatagtccac |
1802279 |
T |
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| Q |
312 |
tactcaattactcctacatatcttccattttttaaagcaattactagcacaaccttttttgcctcaatactatagtattttgaattgattatactaaaat |
411 |
Q |
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| T |
1802280 |
tactcaattactcctacatatcttccattttttaaagcaatcactagcacaaccttttttgcctcaatattatagtattttgaattgattatactaaaat |
1802379 |
T |
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| Q |
412 |
tgtgtatatatatacacacaaacaccttttgatattaggcaccataatcaccatgaacattgaaagcttctcacacgaccccacaacaaccataaccacc |
511 |
Q |
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| T |
1802380 |
tgtgtatatatatacacacaaacaccttttgatattaggcaccataatcaccatgaacattgaaagcttctcacacgaccccacaacaaccataaccacc |
1802479 |
T |
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| Q |
512 |
accttaaaccttccaaagcacaacccttctctcgaaggaat |
552 |
Q |
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| T |
1802480 |
accttaaaccttccaaaacacaacccttctctcgaaggaat |
1802520 |
T |
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