View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232_low_30 (Length: 243)
Name: NF2232_low_30
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232_low_30 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 29041303 - 29041083
Alignment:
| Q |
8 |
tagcaaaggaacgcggttgtggttgaggtgctgaaaccgccgctgctgaagtcagagccatgggagatagcgcagctttggatggtatagctgccggcaa |
107 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |
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| T |
29041303 |
tagcaaaggaacgcagttgtggttgaggtgctgaaaccgccgctgctgaagtcagagccatgggagatggtgcaactttggatggtatagctgccggcaa |
29041204 |
T |
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| Q |
108 |
ggagaactctgcctgccagtcgaaaggcataacataaatctggtagaaacaatcaggtcgaaagaatttgatttgaacgtgaggtagcaaatctaattgt |
207 |
Q |
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| T |
29041203 |
ggagaacactacctgccagtcgaaaggcataacataaatccggtagaaacaatcaggtcgaaagaatttgatttgaacgtgaggtagcaaatctaattgt |
29041104 |
T |
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| Q |
208 |
tccaaagattcaccaaagttg |
228 |
Q |
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||||||||||||||||||||| |
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| T |
29041103 |
tccaaagattcaccaaagttg |
29041083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 28975883 - 28976011
Alignment:
| Q |
10 |
gcaaaggaacgcggttgtggttgaggtgctgaaaccgccgctgctgaagtcagagccatgggagatagcgcagctttggatggtatagctgccggcaagg |
109 |
Q |
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|||||||| |||||| ||||||| ||||||| |||||||| || || | ||| |||||||||||| | ||||||||||| | | |||||||||||| |
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| T |
28975883 |
gcaaaggaccgcggtggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccggcaata |
28975982 |
T |
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| Q |
110 |
agaactctgcctgccagtcgaaaggcata |
138 |
Q |
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| T |
28975983 |
acaactctgcctgctagtcgaacggcata |
28976011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 20950491 - 20950279
Alignment:
| Q |
9 |
agcaaaggaacgcggttgtggttgaggtgctgaaaccgccgctgctgaagtcagagccatgggagatagcgcagctttggatggtatagctgccggcaag |
108 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
20950491 |
agcaaaggaacgcggctgtggttgaggtgctgaaaccgccgctgctggagtcaaagccatgggagattgcgcagctttggatggtgtagctgctggcaag |
20950392 |
T |
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| Q |
109 |
gagaactctgcctgccagtcgaaaggcataacataaatctggtagaaacaatcaggtcgaaagaatttgatttgaacgtgaggtagcaaatctaattgtt |
208 |
Q |
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|||| |||||||||||| |||||||||||| || ||||| |||| |||||||||||||||| || ||||||||||| |||||||| |||||||||||||| |
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| T |
20950391 |
gagagctctgcctgccattcgaaaggcatagcagaaatccggtataaacaatcaggtcgaatgagtttgatttgaaagtgaggtaacaaatctaattgtt |
20950292 |
T |
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| Q |
209 |
ccaaagattcacc |
221 |
Q |
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|||||||| |||| |
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| T |
20950291 |
ccaaagatgcacc |
20950279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 38501753 - 38501882
Alignment:
| Q |
9 |
agcaaaggaacgcggttgtggttgaggtgctgaaaccgccgctgctgaagtcagagccatgggagatagcgcagctttggatggtatagctgccggcaag |
108 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| |
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| T |
38501753 |
agcaaaggaacgcggctgtggttgaggtgctgaaatcgccgctgctgaagtcagagccatgggagatggcgctgctttggatggtgtagctgccggcaaa |
38501852 |
T |
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| Q |
109 |
gagaactctgcctgccagtcgaaaggcata |
138 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
38501853 |
gagagctctgcctgccagtcgaaaggcata |
38501882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 9282825 - 9282713
Alignment:
| Q |
10 |
gcaaaggaacgcggttgtggttgaggtgctgaaaccgccgctgctgaagtcagagccatgggagatagcgcagctttggatggtatagctgccggcaagg |
109 |
Q |
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|||||||| |||||| ||||||| ||||||| ||||| |||| |||| ||| |||||||||||| || || ||||||| ||| |||||| |||||| |
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| T |
9282825 |
gcaaaggaccgcggtggtggttgtggtgctgggaccgcagctgtggaagacagtgccatgggagatggcacaactttggagggtgtagctgtcggcaata |
9282726 |
T |
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| Q |
110 |
agaactctgcctg |
122 |
Q |
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| T |
9282725 |
acaactctgcctg |
9282713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 5280 - 5415
Alignment:
| Q |
9 |
agcaaaggaacgcggttgtggttgaggtgctgaaaccgccgctgctgaagtcagagccatgggagatagcgcagctttggatggtatagctgccggcaag |
108 |
Q |
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|||||||||||||| |||||||||||||| |||| || |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |
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| T |
5280 |
agcaaaggaacgcgactgtggttgaggtgc---aaccaccactgctgaagtcagagccatgggagatggcgcaactttggatggtgtagctgccggcaaa |
5376 |
T |
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| Q |
109 |
gagaactctgcctgccagtcgaaaggcataacataaatc |
147 |
Q |
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|||| |||||| |||||||||||||||||| || ||||| |
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| T |
5377 |
gagagctctgcttgccagtcgaaaggcatagcagaaatc |
5415 |
T |
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