View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2232_low_35 (Length: 208)

Name: NF2232_low_35
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2232_low_35
NF2232_low_35
[»] chr2 (4 HSPs)
chr2 (4-208)||(42281530-42281734)
chr2 (1-188)||(42255171-42255356)
chr2 (1-99)||(42260699-42260797)
chr2 (133-190)||(42260817-42260874)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-99)||(489534-489632)
scaffold0002 (133-190)||(489652-489709)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 4 - 208
Target Start/End: Original strand, 42281530 - 42281734
Alignment:
Q  4 aagaatgataagtgataagtaaatcaaaaaatcgaatccacaaccacaaaatgaagatgaaactatacatagatattttccatgtttaaaattatcnnnn 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        
T  42281530 aagaatgataagtgataagtaaatcaaaaaatcgaatccacaaccacaaaatgaagatgaaactatacatagatattttccatgtttaaaagtatcaaaa 42281629  T
Q  104 nnntaattcacaagtagaactcgtgaattgaataaacaggtttctagtccatcacactgaatttctccaatacaatgctacaattattctagatgtaact 203  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  42281630 aaataattcacaagtagaactcgtgaattgaataaacaggtttctagtccatcacactgaatttgtcctatacaatgctacaattattctagatgtaact 42281729  T
Q  204 tagtt 208  Q
    |||||    
T  42281730 tagtt 42281734  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 42255171 - 42255356
Alignment:
Q  1 ttcaagaatgataagtgataagtaaatcaaaaaatcgaatccacaaccacaaaatgaagatgaaactatacatagatattttccatgtttaaaattatcn 100  Q
    ||||||||||||||||||||| |||||||||| |||| |||||  ||| |||||||||||||||||||   |||||||||||||||||||||||  |||     
T  42255171 ttcaagaatgataagtgataaataaatcaaaagatcgtatcca--accgcaaaatgaagatgaaactaacaatagatattttccatgtttaaaagcatc- 42255267  T
Q  101 nnnnnntaattcacaagtagaactcgtgaattgaataaacaggt-ttctagtccatcacactgaatttctccaatacaatgctacaatt 188  Q
          ||||||||||||||||||| |||| |||||||||| || |||||||||||||  ||||| || ||||||||||||||||||||    
T  42255268 aaaaaataattcacaagtagaactcatgaaatgaataaacatgtgttctagtccatcatcctgaagttgtccaatacaatgctacaatt 42255356  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 42260699 - 42260797
Alignment:
Q  1 ttcaagaatgataagtgataagtaaatcaaaaaatcgaatccacaaccacaaaatgaagatgaaactatacatagatattttccatgtttaaaattatc 99  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |||||| ||||    
T  42260699 ttcaagaatgataagtgataagtaaatcataagatcgaatccacaaccacaaaacgaagatgaatctatccatagatattttccatgcttaaaagtatc 42260797  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 42260817 - 42260874
Alignment:
Q  133 gaataaacaggtttctagtccatcacactgaatttctccaatacaatgctacaattat 190  Q
    |||||||||||||||||||| |||||  |||| || |||| |||| ||||||||||||    
T  42260817 gaataaacaggtttctagtctatcaccatgaagttgtccattacattgctacaattat 42260874  T

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Target: scaffold0002 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 489534 - 489632
Alignment:
Q  1 ttcaagaatgataagtgataagtaaatcaaaaaatcgaatccacaaccacaaaatgaagatgaaactatacatagatattttccatgtttaaaattatc 99  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |||||| ||||    
T  489534 ttcaagaatgataagtgataagtaaatcataagatcgaatccacaaccacaaaacgaagatgaatctatccatagatattttccatgcttaaaagtatc 489632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 489652 - 489709
Alignment:
Q  133 gaataaacaggtttctagtccatcacactgaatttctccaatacaatgctacaattat 190  Q
    |||||||||||||||||||| |||||  |||| || |||| |||| ||||||||||||    
T  489652 gaataaacaggtttctagtctatcaccatgaagttgtccattacattgctacaattat 489709  T

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