View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232_low_7 (Length: 412)
Name: NF2232_low_7
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 24482911 - 24482532
Alignment:
| Q |
18 |
ataactatcagtaacattgaaccggtagtatccatagaaatgttactatttaatatccatagctattggttatgtagtgagaagactaataaatgtagag |
117 |
Q |
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| T |
24482911 |
ataactatcaataacattgaaccggtaatatccatagaaatgttactatttaatatccatagctattggttatgtagtcagaagactaataaatgtagag |
24482812 |
T |
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| Q |
118 |
caaaatttacaagtagacacactagtggnnnnnnnnnnctcatgcaaaaatatttgatgaagaggtaatattgttgttgtgttatgcaatttttgtcttg |
217 |
Q |
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| T |
24482811 |
caaaatttacaagtagacacactagtggaaaaaaaaaactcatgcaaaa-tatttgatgaagaggtaatattgttgctgtgttatgcaatttttgtcttc |
24482713 |
T |
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| Q |
218 |
ttgtctatgtttggactcgtgctagctgttgtatcagagcaacattagttcttagactactttttctttgagatgttactgtgaagatcagaacctaagt |
317 |
Q |
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| T |
24482712 |
ttgtctatgtttggactcgtgctaactgttgtatcatagcaacattagtttttagactactttttctttgagatgttactgtgaagatcagaacctaagt |
24482613 |
T |
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| Q |
318 |
tttgtttgttttaataaaattgtgattttgatcaatcttgttatta---ttatagggtaatgacattcttcaattggattg |
395 |
Q |
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| T |
24482612 |
tttgtttgtttcaataaaattgtgattttgatcaatcttgttattattattatagggtaatgacattcttcaattggattg |
24482532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 240 - 395
Target Start/End: Original strand, 14150239 - 14150392
Alignment:
| Q |
240 |
tagctgttgtatcagagcaacattagttcttagactactttttctttgagatgttactgtgaagatcagaacctaagttttgtttgttttaataaaattg |
339 |
Q |
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| T |
14150239 |
tagctgttgtatcagagaaacattggtttttagactacttttgctttaaggtgttagtatgaggatcagaacctaagtt--gtttgttataataaaagtg |
14150336 |
T |
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| Q |
340 |
tgattttgatcaatcttgttattattatagggtaatgacattcttcaattggattg |
395 |
Q |
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| T |
14150337 |
tgattttgatcaatcttgttattattacacggcaatgacattcttcaattggattg |
14150392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 274 - 390
Target Start/End: Complemental strand, 14151402 - 14151286
Alignment:
| Q |
274 |
ctactttttctttgagatgttactgtgaagatcagaacctaagttttgtttgttttaataaaattgtgattttgatcaatcttgttattattatagggta |
373 |
Q |
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| T |
14151402 |
ctacttttgctttgaggtgttactataaagatcagaacctaagttttgtctattttaataaaagtgtgattttgatcaatcttgttattactacagggca |
14151303 |
T |
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| Q |
374 |
atgacattcttcaattg |
390 |
Q |
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| T |
14151302 |
atgacattctttaattg |
14151286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 361
Target Start/End: Original strand, 42713933 - 42713968
Alignment:
| Q |
326 |
ttttaataaaattgtgattttgatcaatcttgttat |
361 |
Q |
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| T |
42713933 |
ttttaataaaattgtgattttgatcaatcttgttat |
42713968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 27968899 - 27968967
Alignment:
| Q |
156 |
ctcatgcaaaaatatttgatgaagaggtaatattgttgttgtgttatgcaatttttgtcttgttgtctatgt |
227 |
Q |
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| T |
27968899 |
ctcatgcagaaatatgtgatgaagaggtgat---gttgttgtgttctgcagtttttctcttgttgtctatgt |
27968967 |
T |
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