View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2232_low_8 (Length: 409)

Name: NF2232_low_8
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2232_low_8
NF2232_low_8
[»] chr6 (1 HSPs)
chr6 (1-401)||(5951298-5951698)
[»] chr5 (1 HSPs)
chr5 (11-186)||(31951650-31951825)
[»] chr3 (4 HSPs)
chr3 (40-170)||(28188578-28188708)
chr3 (252-336)||(28153837-28153921)
chr3 (103-201)||(28507736-28507834)
chr3 (19-112)||(36630146-36630239)
[»] chr2 (3 HSPs)
chr2 (252-394)||(22396537-22396679)
chr2 (134-198)||(22396747-22396811)
chr2 (38-74)||(22396846-22396882)
[»] scaffold1163 (1 HSPs)
scaffold1163 (38-74)||(2254-2290)
[»] chr7 (2 HSPs)
chr7 (19-73)||(27092402-27092456)
chr7 (19-73)||(27185845-27185899)


Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 5951698 - 5951298
Alignment:
Q  1 atactttctcttttgtggcaggaactccggagttcacggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtg 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5951698 atactttctcttttgtggcaggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtgtactcatttggcatgtg 5951599  T
Q  101 tgttttggaaattatgacatcagactatccatatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  5951598 tgttttggaaattatgacatcagactatccatatagtgagtgtactaacccggcacaaatatacaagaaagtgacatcggtaaattaagaacttggttta 5951499  T
Q  201 aagtttaatgatactagtaaactcgaaataatatataagtattttttctatctttcaatgttcagggtaagctaccagcaacacttttccgaattgaaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951498 aagtttaatgatactagtaaactcgaaataatatataagtattttttctatctttcaatgttcagggtaagctaccagcaacacttttccgaattgaaga 5951399  T
Q  301 tgcagaagcacgcgagtttattggaaaatgcctagtaaatgcagcaaggagaccatcagcaaaagaactgttgcatgatccatttcttgtgtctgatgat 400  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951398 tgcagaagcacgagagtttattggaaaatgcctagtaaatgcagcaaggagaccatcagcaaaagaactgttgcatgatccatttcttgtgtctgatgat 5951299  T
Q  401 g 401  Q
    |    
T  5951298 g 5951298  T

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Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 31951825 - 31951650
Alignment:
Q  11 ttttgtggcaggaactccggagttcacggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaa 110  Q
    |||||||  |||||| |||||||||| |||||| ||  ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  31951825 ttttgtgttaggaacaccggagttcatggcaccggaaatgtacgaggaagaatacaatgaacttgctgatgtttactcatttggcatgtgtgtattggaa 31951726  T
Q  111 attatgacatcagactatccatatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaatt 186  Q
    ||  | ||||| || |||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||    
T  31951725 atgctcacatctgattatccatatagtgaatgtactaatccagcacagatatacaagaaagtgacatcggtaaatt 31951650  T

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Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 40 - 170
Target Start/End: Original strand, 28188578 - 28188708
Alignment:
Q  40 caccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaattatgacatcagactatccatatagtga 139  Q
    |||||||  |||| || |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||   | | ||| ||||||||    
T  28188578 caccagaactgtatgatgaagaatacaatgaacttgttgatgtgtactcatttggcatgtgtgctttggaaattattacatattattgtccttatagtga 28188677  T
Q  140 gtgtactaacccagcgcaaatatacaagaaa 170  Q
    |||| ||||| | ||| | ||||||||||||    
T  28188678 gtgtgctaacacggcgtagatatacaagaaa 28188708  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 28153837 - 28153921
Alignment:
Q  252 ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagt 336  Q
    |||| |||||||| |||| ||||||||||||||||||| || ||||||||||| |||||   |||||||||||||||||||||||    
T  28153837 cttttaatgttcaaggtatgctaccagcaacacttttctgatttgaagatgcaaaagcattggagtttattggaaaatgcctagt 28153921  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 28507834 - 28507736
Alignment:
Q  103 ttttggaaattatgacatcagactatccatatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtttaa 201  Q
    |||||||||| || ||||| ||||||| ||||||||| |||||  || | || || |||||||||||||||| |||| | ||||| ||| |||||||||    
T  28507834 ttttggaaatgattacatctgactatctatatagtgaatgtacagactcggcacatatatacaagaaagtgaaatcgtttaattacgaatttggtttaa 28507736  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 36630239 - 36630146
Alignment:
Q  19 caggaactccggagttcacggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaat 112  Q
    |||| ||||| || |||| ||| |||||| | || || ||||||||||||||||||||||| || || || |||||||||||| | ||||||||    
T  36630239 caggtactccagaattcatggccccagagctttatgaggaagaatacaatgaacttgttgacgtatattcctttggcatgtgtatcttggaaat 36630146  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 394
Target Start/End: Complemental strand, 22396679 - 22396537
Alignment:
Q  252 ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagtaaatgcagcaaggag 351  Q
    |||| ||||||||| |||||||||||| | ||||| |||  || |||||||| |||| ||| |||||||||| |||||||||||| || |||| ||  |     
T  22396679 cttttaatgttcagtgtaagctaccagaagcacttatcctgatagaagatgccgaagtacgagagtttattgaaaaatgcctagtgaaagcagtaaaaaa 22396580  T
Q  352 accatcagcaaaagaactgttgcatgatccatttcttgtgtct 394  Q
    ||| |  |||||| ||||| |||||||||||||||||||||||    
T  22396579 acctttggcaaaataactgctgcatgatccatttcttgtgtct 22396537  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 22396811 - 22396747
Alignment:
Q  134 tagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtt 198  Q
    ||||||||||||| ||||||| |   ||| ||||||||||||||||||||||| ||| |||||||    
T  22396811 tagtgagtgtactgacccagctctgttattcaagaaagtgacatcggtaaattcagatcttggtt 22396747  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 22396882 - 22396846
Alignment:
Q  38 ggcaccagagttgtacgaagaagaatacaatgaactt 74  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  22396882 ggcaccagaattgtacgaagaagaataaaatgaactt 22396846  T

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Target: scaffold1163 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 2290 - 2254
Alignment:
Q  38 ggcaccagagttgtacgaagaagaatacaatgaactt 74  Q
    ||||||||| |||||||||||||||||||||||||||    
T  2290 ggcaccagaattgtacgaagaagaatacaatgaactt 2254  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 27092456 - 27092402
Alignment:
Q  19 caggaactccggagttcacggcaccagagttgtacgaagaagaatacaatgaact 73  Q
    |||| ||||| ||||||| ||||||||| |||||||||||  |||||||||||||    
T  27092456 caggtactccagagttcatggcaccagaattgtacgaagagaaatacaatgaact 27092402  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 27185845 - 27185899
Alignment:
Q  19 caggaactccggagttcacggcaccagagttgtacgaagaagaatacaatgaact 73  Q
    |||| ||||| ||||||| ||||||||| |||||||||||  |||||||||||||    
T  27185845 caggtactccagagttcatggcaccagaattgtacgaagagaaatacaatgaact 27185899  T

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