View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2233_low_1 (Length: 503)
Name: NF2233_low_1
Description: NF2233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2233_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Complemental strand, 30737964 - 30737491
Alignment:
| Q |
16 |
atctcaaccatatagtgagtggcgcatcaaggatctcgcagaaaatgtgggattgaagttaattgaagaagtggattttcaaagatcattttatccaggt |
115 |
Q |
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| T |
30737964 |
atctcaaccatatagtgagtggcgcatcaaggatctcgcagaaaatgtgggattgaagttaattgaagaagtggattttcaaagatcattttatccaggt |
30737865 |
T |
|
| Q |
116 |
tattataacaagagaggatcaggctcgaaatgtaaccagagtttccatattggaaggagtagtacctacaaattttgtagggttttttattttgaaaagg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30737864 |
tattataacaagagaggatcaggctcgaaatgtaaccagagtttccatattggaaggagtagtacctacaaattttgtagggttttttattttgaagagg |
30737765 |
T |
|
| Q |
216 |
aaatttttcctttgtattgagtacgtagtaatctcaacaagtttgtgcatttatcaagaaggtatttcttgatgcaaatttgacacacttaaatagagtc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
30737764 |
aaatttttcctttgtattgagtacgtagtaatctcaacaagtttctgcatttatcaagaaggtatttcttgatgtaaatttgacacacttaaatagaggc |
30737665 |
T |
|
| Q |
316 |
tttctctatgctgaagtggaggaatctgatatctgagtgaaggatcttcacagacatgacttattatgcttgggtcaaggcataatttaacat-gatgta |
414 |
Q |
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|||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |
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| T |
30737664 |
tttctctatgctgaagtggacgagtctgatatatgagtgaaggatcttcacagacatgacttattatgcttgagtcaaggcataagttaacatggatgta |
30737565 |
T |
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| Q |
415 |
tataaaacatctatgatgcttcttttgtattggaggcttccaatagattttgtgtccttgcttcaatgatgaat |
488 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
30737564 |
tataaaacatctatgatacttcttttgtattggaggcttccaatagatttcgtgtccttgcttcaaggatgaat |
30737491 |
T |
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