View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2233_low_2 (Length: 460)
Name: NF2233_low_2
Description: NF2233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2233_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 9105536 - 9105094
Alignment:
| Q |
1 |
atagagtcaacacactcgtgagtgcatcaggtcctccacaaactgagaaaattaccgagcctaccaaaaagagagttagaggtgcaacgcgaatggcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105536 |
atagagtcaacacactcgtgagtgcatcaggtcctccacaaactgagaaaattaccgagcctaccaaaaagagagttagaggtgcaacgcgaatggcaca |
9105437 |
T |
|
| Q |
101 |
ttttttgcttaaacgtttgaatggtgaaaagattccgattgacttcgatcaatataccaaaaagcctttaggggaaaacagnnnnnnnttcaaaagtcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
9105436 |
ttttttgcttaaacgtttgaatggtgaaaagattctgattgactttgatcaatataccaaaaagcctttaggggaaaactgaaaaaaattcaaaagtcat |
9105337 |
T |
|
| Q |
201 |
gtgggttacattgctagaagcaaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaagatatcatggtaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105336 |
gtgggttacattgctagaagcaaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaagatatcatggtaa |
9105237 |
T |
|
| Q |
301 |
tactatttatgattgtcagttgtaccacttaattatattatttccatacactaactcttttatctgctatataacataggaacaatgggatattcctgat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9105236 |
tactatttatgattgtcagttgtaccacttaattatattatttccatacactaactcttttatctgctatataacataggaacaatgggatattcctgat |
9105137 |
T |
|
| Q |
401 |
actcatgatatttcaaaattgaaagacaaatggctatcctatg |
443 |
Q |
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| T |
9105136 |
actcatgatatttcaaaattgaaagacaaatggctatcctatg |
9105094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 220 - 443
Target Start/End: Original strand, 41076322 - 41076545
Alignment:
| Q |
220 |
gcaaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaagatatcatggtaatactatttatgattgtcag |
319 |
Q |
| |
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|||||||||||||||| |||||| |||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41076322 |
gcaaagtcagtatttttgtggatcattgggatcttgtaagcgagactgttaaagaccagatttaggaagatatcatggtaatactatttatgattgtcag |
41076421 |
T |
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| Q |
320 |
ttgtaccacttaattatattatttccatacactaactcttttatctgctatataacataggaacaatgggatattcctgatactcatgatatttcaaaat |
419 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41076422 |
ttgtaacacttaattatattatttccatgcactaactcttttatctgctatataacacaggaacaatgggatattccaaatactcatgatatttcaaaat |
41076521 |
T |
|
| Q |
420 |
tgaaagacaaatggctatcctatg |
443 |
Q |
| |
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| T |
41076522 |
tgaaagacaaatggatatcctatg |
41076545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 122 - 443
Target Start/End: Complemental strand, 22819880 - 22819556
Alignment:
| Q |
122 |
tggtgaaaagattccgattgacttcgatcaatataccaaaaagcctttaggggaaaacagnnnnnnn-ttcaaaagtcatgtgggttacattgctagaag |
220 |
Q |
| |
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|||||||| ||| |||||||| |||||| || ||||||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
22819880 |
tggtgaaaggataccgattgaattcgatgtatgaaccaaaacgcctttaggggaatacagaagaaaaattcaaaagtcatgtgggttccattgctagaag |
22819781 |
T |
|
| Q |
221 |
caaagtcagtattttggtggataattgggatcttgtaagcgtgactgtcaaagacaagatttgggaagatatcatggtaatactatttatgattgtcagt |
320 |
Q |
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|||||| |||||||||||| || ||||||||||| |||||| |||| | |||||| ||||||| ||||||||||||||| ||||||||| |||||||||| |
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| T |
22819780 |
caaagttagtattttggtgaatcattgggatcttataagcg-gactattaaagaccagatttgagaagatatcatggtattactatttacgattgtcagt |
22819682 |
T |
|
| Q |
321 |
tgtaccacttaattatattatttccatacactaactcttttatctgctatataacataggaacaatgggatattcc---tgatactcatgatatttcaaa |
417 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| || |
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| T |
22819681 |
tgtaacacttaattatattatttccgtacactaactcttttatctgctatataacacaggaacaatgggatattccaaataatactcatgatatttataa |
22819582 |
T |
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| Q |
418 |
attgaaagacaaatggctatcctatg |
443 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
22819581 |
attgaaagacaaatggctatcctatg |
22819556 |
T |
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