View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2233_low_4 (Length: 333)
Name: NF2233_low_4
Description: NF2233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2233_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 41708628 - 41708923
Alignment:
| Q |
1 |
caaaggaataccaagagcctcaatattcttcttcattgatttctccaacaactcactttttctcaccccatatgcatttttgctatcattcacccatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41708628 |
caaaggaataccaagagcctcaatattcttcttcattgatttctccaataactcactttttctcaccccatatgcatttttgctatcattcacccatttc |
41708727 |
T |
|
| Q |
101 |
tccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgttttcttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
41708728 |
tccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtctttttcagctaagtttgttttcttaa |
41708827 |
T |
|
| Q |
201 |
cttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttcaaacctcg |
296 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41708828 |
cttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttgaaacctcg |
41708923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 41717700 - 41717993
Alignment:
| Q |
1 |
caaaggaataccaagagcctcaatattcttcttcattgatttctccaacaactcactttttctcaccccatatgcatttttgctatcattcacccatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41717700 |
caaaggaataccaagagcctcaatattcttcttcattgatttctccaataactcactttttctcaccccatatgcatttttgctatcattcacccatttc |
41717799 |
T |
|
| Q |
101 |
tccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgttttcttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
41717800 |
tccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtctttttcagctaagtttgttttcttaa |
41717899 |
T |
|
| Q |
201 |
cttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttcaaacct |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41717900 |
cttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttgaaacct |
41717993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 101 - 296
Target Start/End: Original strand, 41686347 - 41686545
Alignment:
| Q |
101 |
tccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgtttt---ct |
197 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||| ||||| | ||| | || | ||||| || |
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|
| T |
41686347 |
tccttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttcct |
41686446 |
T |
|
| Q |
198 |
taacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggcttcaaacctcg |
296 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
41686447 |
taacttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcagcttgaaacctcg |
41686545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 80 - 295
Target Start/End: Original strand, 41659334 - 41659549
Alignment:
| Q |
80 |
ttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtcttttt |
179 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| || |||| ||||| || |
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| T |
41659334 |
ttgctatcatccacccactttcgcttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatgtctcctt |
41659433 |
T |
|
| Q |
180 |
cagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttc |
279 |
Q |
| |
|
|| |||| | |||||||||||||||| ||| || ||||||||||| | ||||| ||||| ||| |||| || |||||||||||||||||||||||||| |
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|
| T |
41659434 |
caactaaactagttttcttaacttcctccaacaatgtttcataattactctgtgccctttttcctctttcgcatagttcctctctttttctcaaatcttc |
41659533 |
T |
|
| Q |
280 |
ctcggcttcaaacctc |
295 |
Q |
| |
|
|| |||| ||||||| |
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| T |
41659534 |
ttcagcttgaaacctc |
41659549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 282
Target Start/End: Complemental strand, 41688006 - 41687801
Alignment:
| Q |
80 |
ttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtcttttt |
179 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||| ||||||||||| |||||||||||| ||| ||||||||| ||| ||| ||| ||||| | | |
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|
| T |
41688006 |
ttgctatcatcgacccatttttcattcaactttctcagctcacaaacttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctctct |
41687907 |
T |
|
| Q |
180 |
cagctaagtttgtttt---cttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatc |
276 |
Q |
| |
|
|| || | ||||| || ||||||||||| || ||||||||| | |||||||||||||||| ||||||| |||||||||||||| |||| ||| |
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| T |
41687906 |
caatcaaactagttttttgtttgacttccttcaacaatgcttcataattttgttgtgctcttttccctctttcacatagttcctctcttttcctcacatc |
41687807 |
T |
|
| Q |
277 |
ttcctc |
282 |
Q |
| |
|
|||||| |
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|
| T |
41687806 |
ttcctc |
41687801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 14682517 - 14682426
Alignment:
| Q |
191 |
gttttcttaacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctc |
282 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| |||||| |||||||| | ||||||| |||||| || || ||||| |||||||| |
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|
| T |
14682517 |
gttttcttaacttccttcaacaatttttcataattattctgtgcttttttccctctctcacacatttcctccctcttcctcaattcttcctc |
14682426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 14682687 - 14682624
Alignment:
| Q |
15 |
gagcctcaatattcttcttcattgatttctccaacaactcactttttctcaccccatatgcattttt |
81 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| ||| |||||||| |||||||||| |
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|
| T |
14682687 |
gagcctcacaattcttcttcattgatttctc---caactcactatttttcaccccaaatgcattttt |
14682624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 287
Target Start/End: Complemental strand, 14691033 - 14690869
Alignment:
| Q |
123 |
aaacttctaactccaattcattgttcttctttcttagctgtccaatgctgtctttttcagctaagtttgttttcttaacttccttcaataacttttcata |
222 |
Q |
| |
|
||||||| |||||||||||||| || ||| || |||||| | ||||| ||| ||||| |||| | ||||||||| |||| |||| | |||||||| |
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|
| T |
14691033 |
aaacttccaactccaattcattattattcatttttagctcaacgatgctttctctttcacctaaactatttttcttaatttccatcaacgatttttcata |
14690934 |
T |
|
| Q |
223 |
attattttgtgctcttttccctttttcacacagttcctctctttttctcaaatcttcctcggctt |
287 |
Q |
| |
|
|||||| ||||| |||| || | |||||||||||||| || || ||||||||||||| |||| |
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|
| T |
14690933 |
attattctgtgccattttagctctctcacacagttcctcactcttcttcaaatcttcctcagctt |
14690869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 2439189 - 2439118
Alignment:
| Q |
85 |
atcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttct |
156 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||| |||||| | || |||||||||| ||||||||||||||| |
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|
| T |
2439189 |
atcatccacccatttttccaccaactttctcagctcacaagcatccaactccaatttattgttcttctttct |
2439118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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