View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2234_high_1 (Length: 522)
Name: NF2234_high_1
Description: NF2234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2234_high_1 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 20 - 522
Target Start/End: Original strand, 15802 - 16304
Alignment:
| Q |
20 |
ttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacat |
119 |
Q |
| |
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||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15802 |
ttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacat |
15901 |
T |
|
| Q |
120 |
taattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgataattat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15902 |
taattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattat |
16001 |
T |
|
| Q |
220 |
ctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaact |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16002 |
ctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaact |
16101 |
T |
|
| Q |
320 |
accagttctacaaccaatctaatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttcc |
419 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16102 |
accagttctacaaccaatctaaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttcc |
16201 |
T |
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| Q |
420 |
aggagttagcaccgacaagcttcacattgagcctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactc |
519 |
Q |
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| T |
16202 |
aggagttagcaccgacaagcttcacattgagcctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactc |
16301 |
T |
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| Q |
520 |
cct |
522 |
Q |
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||| |
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| T |
16302 |
cct |
16304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 20 - 522
Target Start/End: Original strand, 25970 - 26472
Alignment:
| Q |
20 |
ttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacat |
119 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25970 |
ttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacat |
26069 |
T |
|
| Q |
120 |
taattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgataattat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26070 |
taattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattat |
26169 |
T |
|
| Q |
220 |
ctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaact |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26170 |
ctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaact |
26269 |
T |
|
| Q |
320 |
accagttctacaaccaatctaatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttcc |
419 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26270 |
accagttctacaaccaatctaaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttcc |
26369 |
T |
|
| Q |
420 |
aggagttagcaccgacaagcttcacattgagcctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactc |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26370 |
aggagttagcaccgacaagcttcacattgagcctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactc |
26469 |
T |
|
| Q |
520 |
cct |
522 |
Q |
| |
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||| |
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| T |
26470 |
cct |
26472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 20 - 522
Target Start/End: Original strand, 36136 - 36638
Alignment:
| Q |
20 |
ttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacat |
119 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36136 |
ttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacat |
36235 |
T |
|
| Q |
120 |
taattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgataattat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36236 |
taattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattat |
36335 |
T |
|
| Q |
220 |
ctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaact |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36336 |
ctacgcatcaagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaact |
36435 |
T |
|
| Q |
320 |
accagttctacaaccaatctaatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttcc |
419 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36436 |
accagttctacaaccaatctaaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttcc |
36535 |
T |
|
| Q |
420 |
aggagttagcaccgacaagcttcacattgagcctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactc |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36536 |
aggagttagcaccgacaagcttcacattgagcctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactc |
36635 |
T |
|
| Q |
520 |
cct |
522 |
Q |
| |
|
||| |
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|
| T |
36636 |
cct |
36638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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