View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2234_high_2 (Length: 471)
Name: NF2234_high_2
Description: NF2234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2234_high_2 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 453
Target Start/End: Complemental strand, 9053209 - 9052767
Alignment:
| Q |
8 |
tgagatgaaggcaatgaagccatttaaccccaccatgtataacgacttagaatatacatcatcgcctaagggtacaagtgttgtaaacaacacctcattt |
107 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
9053209 |
tgagatgaaggcaatggagccatttaaccccaccatgtataacgacttagaatatacatc---gcctaagggtacaagtgttgtaaagaacacctcattt |
9053113 |
T |
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| Q |
108 |
ctcaagtcaaatgattccacctctactccatcatactttttaccatattgccaccaatgacacatttcattcgtgtatagtcgtacaccagcgatgttag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9053112 |
ctcaagtcaaatgattccacctctactccatcatactttttaccatattgccaccaatgacacatttcattcgtgtatagtcgtacaccagcgatgttag |
9053013 |
T |
|
| Q |
208 |
aaaagcatgaacaagcagagtaattaacatcaagttttctccaagtgttacttttaaggctatatatctcccataagtattcataagataaatctttcca |
307 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9053012 |
aaaaacatgaacaagcagagtcattaacatcaagttttctccaagtgttacttttaaggctatatatctcccataagtattcataagataaatctttcca |
9052913 |
T |
|
| Q |
308 |
tggtgcatcactccatgaaataccaagttcttcacactcttcgtattctaagttagaataacctgcacacctaataaacttataatcatctctaactata |
407 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
9052912 |
tggcgcatcactccatgaaataccaagttcttcacactcttcgtattctaagttaaaataacctacacacctaatcaacttataatcatctctaactata |
9052813 |
T |
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| Q |
408 |
tcataaccaaacccaagaggattaactataaatttttgataaggtg |
453 |
Q |
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| T |
9052812 |
tcataaccaaacccaagaggattaactacaaacttttgataaggtg |
9052767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 37512651 - 37512601
Alignment:
| Q |
230 |
attaacatcaagttttctccaagtgttacttttaaggctatatatctccca |
280 |
Q |
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| T |
37512651 |
attaacatcaagttttctccaagagttgcttcttaggctatatatatccca |
37512601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 27173761 - 27173805
Alignment:
| Q |
236 |
atcaagttttctccaagtgttacttttaaggctatatatctccca |
280 |
Q |
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| T |
27173761 |
atcaagtttcctccaagagttactttttaggctgtatatctccca |
27173805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 42629944 - 42629988
Alignment:
| Q |
236 |
atcaagttttctccaagtgttacttttaaggctatatatctccca |
280 |
Q |
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| T |
42629944 |
atcaagttttctccaagagttgcttttaagacaatatatctccca |
42629988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 40140 - 40187
Alignment:
| Q |
236 |
atcaagttttctccaagtgttacttttaaggctatatatctcccataa |
283 |
Q |
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| T |
40140 |
atcaagttttctccacgagttacttcttaggctatatatctcccataa |
40187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 32745203 - 32745254
Alignment:
| Q |
233 |
aacatcaagttttctccaagtgttacttttaaggctatatatctcccataag |
284 |
Q |
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| T |
32745203 |
aacatcaagtttcctccaggagttacttcttaggctatatatctcccataag |
32745254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 25319622 - 25319666
Alignment:
| Q |
236 |
atcaagttttctccaagtgttacttttaaggctatatatctccca |
280 |
Q |
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| T |
25319622 |
atcaagttttctccatgagttacttcttaggctatatatctccca |
25319666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 26149315 - 26149359
Alignment:
| Q |
236 |
atcaagttttctccaagtgttacttttaaggctatatatctccca |
280 |
Q |
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| T |
26149315 |
atcaagttttctccatgagttacttcttaggctatatatctccca |
26149359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 361491 - 361450
Alignment:
| Q |
381 |
ataaacttataatcatctctaactatatcataaccaaaccca |
422 |
Q |
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|||| |||||||||||||||||| | |||||||||||||||| |
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| T |
361491 |
ataatcttataatcatctctaacaaaatcataaccaaaccca |
361450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 22535506 - 22535551
Alignment:
| Q |
235 |
catcaagttttctccaagtgttacttttaaggctatatatctccca |
280 |
Q |
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| T |
22535506 |
catcaagtttcctccaagagttacttctaaggctgtatatctccca |
22535551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 361624 - 361580
Alignment:
| Q |
236 |
atcaagttttctccaagtgttacttttaaggctatatatctccca |
280 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
361624 |
atcaagttttctccagaaattacttttaaggctatatatctccca |
361580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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