View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2234_low_3 (Length: 412)
Name: NF2234_low_3
Description: NF2234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2234_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 90 - 391
Target Start/End: Complemental strand, 30665977 - 30665676
Alignment:
| Q |
90 |
tcactaagactcttacaagttcatcccatattgacctacatttagggatatagcagctcttcaacccaccataaatgagaattttcaagagatacaatga |
189 |
Q |
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| T |
30665977 |
tcactaagactcttacaagttcatcccatattgacctacatttagggatatagcagctcttcaacccaccataaatgagaattttcaagagatacaatga |
30665878 |
T |
|
| Q |
190 |
aggtacaagaaattgacttcagcaatataccataatttctacccttttgagtttcttctctcaacctgtgagaagatctctcaagaagataagagggaaa |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30665877 |
aggtacaagaaattgacttcagcaatataccataatttctacccttttgagtttcttctctcaacctgtgagaagatctctcaagaagataagagggaaa |
30665778 |
T |
|
| Q |
290 |
ccttgaattcttcatttaatgaaatatctttaaccattgtatttagaaagtgtttcttagccataacttctcacccaaaatctctaagaccacgaccctt |
389 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30665777 |
ccttgaattcttcctttaatgaaatatctttaaccattgtatttagaaagtgtttcttagccataacttctcacccaaaatctctaagaccacgatcctt |
30665678 |
T |
|
| Q |
390 |
ag |
391 |
Q |
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|| |
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| T |
30665677 |
ag |
30665676 |
T |
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