View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2234_low_4 (Length: 300)

Name: NF2234_low_4
Description: NF2234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2234_low_4
NF2234_low_4
[»] scaffold0182 (1 HSPs)
scaffold0182 (38-284)||(11290-11543)
[»] chr6 (1 HSPs)
chr6 (38-284)||(16855964-16856204)
[»] chr4 (2 HSPs)
chr4 (77-284)||(43942171-43942372)
chr4 (165-250)||(2501722-2501804)
[»] chr7 (2 HSPs)
chr7 (77-284)||(47933739-47933940)
chr7 (1-43)||(18785317-18785359)
[»] chr3 (6 HSPs)
chr3 (77-284)||(54946541-54946742)
chr3 (146-284)||(5885516-5885651)
chr3 (1-42)||(1607271-1607312)
chr3 (1-42)||(1624292-1624333)
chr3 (1-42)||(1630267-1630308)
chr3 (3-43)||(10819973-10820013)
[»] scaffold0713 (1 HSPs)
scaffold0713 (146-284)||(7408-7546)


Alignment Details
Target: scaffold0182 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 38 - 284
Target Start/End: Original strand, 11290 - 11543
Alignment:
Q  38 ttataagaatgaaggatgtaaaagttctgnnnnnnnnnn-aattaaaataataatgttcagttacatttagttaatattgatgtgtatattcctattaaa 136  Q
    |||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  11290 ttataagaatgaaggatgtaaaagttctgtttttttttttaattaaaataataatgttcagttacatttggttaacattaatgtgtatattcctattaaa 11389  T
Q  137 aataataatgttctttcttattaagattgcaattgattattgtaactc------tttttatcaaaattatgatgtataatggattgaggaagtgacacat 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||| |||||||||||||||||||||||||||||||||    
T  11390 aataataatgttctttcttattaagattgcaattgattattgtaactctttttatttttatcaaaactatgatgtataatggattgaggaagtgacacat 11489  T
Q  231 aagcaaagtagaagaatgatcaagaataaaagttagaaagggggtcattggtga 284  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  11490 aagcaaagtagaagaatgatcaagaataaaagttaaaaagagggtcattggtga 11543  T

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Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 38 - 284
Target Start/End: Complemental strand, 16856204 - 16855964
Alignment:
Q  38 ttataagaatgaaggatgtaaaagttctgnnnnnnnnnnaattaaaataataatgttcagttacatttagttaatattgatgtgtatattcctattaaaa 137  Q
    |||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||     
T  16856204 ttataagaatgaaggatgtaaaagttctgttttttttttaattaaaataataatgttcagttacatttggttaacattgatgtgtatattcctattcaat 16856105  T
Q  138 ataataatgttctttcttattaagattgcaattgattattgtaactctttttatcaaaattatgatgtataatggattgaggaagtgacacataagcaaa 237  Q
        || |  |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||    
T  16856104 ----tact--tctttcttattaagattgcaattgattagtgtaactctttttatcaaaattattatgtataatggtttgaaggagtgacacataagcaaa 16856011  T
Q  238 gtagaagaatgatcaagaataaaagttagaaagggggtcattggtga 284  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  16856010 gtagtagaatgatcaagaataaaagttagaaaggggatcattggtga 16855964  T

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Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 77 - 284
Target Start/End: Complemental strand, 43942372 - 43942171
Alignment:
Q  77 aattaaaataataatgttcagttacatttagttaatattgatgtgtatattcctattaaaaataataatgttctttcttattaagattgcaattgattat 176  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| ||     ||  |||||||||||||||| |||||||||||||     
T  43942372 aattaaaataataatgttcagttacacttggttaacattgatgtgtatattcctattcaat----ta--gttctttcttattaaggttgcaattgattag 43942279  T
Q  177 tgtaactctttttatcaaaattatgatgtataatggattgaggaagtgacacataagcaaagtagaagaatgatcaagaataaaagttagaaagggggtc 276  Q
    |||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||    
T  43942278 tgtaactctttttatcaaaattattatgtataatggtttgagggagtgacacataagcagagtagaagaatgatcaagaataaaaattagaaaggggatc 43942179  T
Q  277 attggtga 284  Q
    ||||||||    
T  43942178 attggtga 43942171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 2501722 - 2501804
Alignment:
Q  165 gcaattgattattgtaactctttttatcaaaattatgatgtataatggattgaggaagtgacacataagcaaagtagaagaatgat 250  Q
    ||||| ||||| |||||||||||||||||||||||||   |||||||| |||||| ||||||||||||||||||||||||||||||    
T  2501722 gcaatagattagtgtaactctttttatcaaaattatg---tataatggtttgagggagtgacacataagcaaagtagaagaatgat 2501804  T

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Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 284
Target Start/End: Original strand, 47933739 - 47933940
Alignment:
Q  77 aattaaaataataatgttcagttacatttagttaatattgatgtgtatattcctattaaaaataataatgttctttcttattaagattgcaattgattat 176  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||     || |  ||||||||||||||||||||||||||||     
T  47933739 aattaaaataataatgttcagttacatttggttaacattgatgtgcatattcctattcaat----tact--tctttcttattaagattgcaattgattag 47933832  T
Q  177 tgtaactctttttatcaaaattatgatgtataatggattgaggaagtgacacataagcaaagtagaagaatgatcaagaataaaagttagaaagggggtc 276  Q
    | |||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||    
T  47933833 tataactctttttatcaaaattattatgtataatggtttgaaggagtgacacataagcaaagtagtagaatgatcaagaataaaatttagaaaggggatc 47933932  T
Q  277 attggtga 284  Q
    ||||||||    
T  47933933 attggtga 47933940  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18785359 - 18785317
Alignment:
Q  1 ataagacaaggtttgtgatacatgctaagaaaggtgtttataa 43  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  18785359 ataagacaaggtttgtgatacatgtgaagaaaggtgtttataa 18785317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 284
Target Start/End: Original strand, 54946541 - 54946742
Alignment:
Q  77 aattaaaataataatgttcagttacatttagttaatattgatgtgtatattcctattaaaaataataatgttctttcttattaagattgcaattgattat 176  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||     || |  ||||||||||||||||||||||||||||     
T  54946541 aattaaaataataatgttcagttacatttggttaacattgatgtgcatattcctattcaat----tact--tctttcttattaagattgcaattgattag 54946634  T
Q  177 tgtaactctttttatcaaaattatgatgtataatggattgaggaagtgacacataagcaaagtagaagaatgatcaagaataaaagttagaaagggggtc 276  Q
    | |||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||    
T  54946635 tataactctttttatcaaaattattatgtataatggtttgaaggagtgacacataagcaaagtagtagaatgatcaagaataaaatttagaaaggggatc 54946734  T
Q  277 attggtga 284  Q
    ||||||||    
T  54946735 attggtga 54946742  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 146 - 284
Target Start/End: Original strand, 5885516 - 5885651
Alignment:
Q  146 gttctttcttattaagattgcaattgattattgtaactctttttatcaaaattatgatgtataatggattgaggaagtgacacataagcaaagtagaaga 245  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||   ||||||||||||||||||||||| |||    
T  5885516 gttctttcttattaagattgcaattgattagtgtaactctttttatcaaaattattatgtataatggctt---gaagtgacacataagcaaagtagtaga 5885612  T
Q  246 atgatcaagaataaaagttagaaagggggtcattggtga 284  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  5885613 atgatcaagaataaaagttagaaagaggatcattggtga 5885651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1607312 - 1607271
Alignment:
Q  1 ataagacaaggtttgtgatacatgctaagaaaggtgtttata 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  1607312 ataagacaaggtttgtgatacatgttaagaaaggtgtttata 1607271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1624333 - 1624292
Alignment:
Q  1 ataagacaaggtttgtgatacatgctaagaaaggtgtttata 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  1624333 ataagacaaggtttgtgatacatgttaagaaaggtgtttata 1624292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1630308 - 1630267
Alignment:
Q  1 ataagacaaggtttgtgatacatgctaagaaaggtgtttata 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  1630308 ataagacaaggtttgtgatacatgttaagaaaggtgtttata 1630267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 10819973 - 10820013
Alignment:
Q  3 aagacaaggtttgtgatacatgctaagaaaggtgtttataa 43  Q
    |||||||||| |||||||||||  |||||||||||||||||    
T  10819973 aagacaaggtatgtgatacatgtgaagaaaggtgtttataa 10820013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 146 - 284
Target Start/End: Complemental strand, 7546 - 7408
Alignment:
Q  146 gttctttcttattaagattgcaattgattattgtaactctttttatcaaaattatgatgtataatggattgaggaagtgacacataagcaaagtagaaga 245  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||| | ||||||||||||||||||||| |||    
T  7546 gttctttcttattaagattgcaattgattagtgtaactctttttatcaaaagtattatgtataatggcttgaaggagtgacacataagcaaagtagtaga 7447  T
Q  246 atgatcaagaataaaagttagaaagggggtcattggtga 284  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  7446 atgatcaagaataaaagttagaaaggggatcattggtga 7408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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