View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2234_low_5 (Length: 250)

Name: NF2234_low_5
Description: NF2234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2234_low_5
NF2234_low_5
[»] chr4 (12 HSPs)
chr4 (26-237)||(52606876-52607089)
chr4 (106-237)||(40413187-40413318)
chr4 (90-237)||(48316156-48316303)
chr4 (108-230)||(27301543-27301666)
chr4 (106-237)||(53560263-53560394)
chr4 (138-237)||(52632887-52632986)
chr4 (163-224)||(42150270-42150331)
chr4 (159-207)||(12865271-12865319)
chr4 (153-224)||(18910366-18910437)
chr4 (140-222)||(16492112-16492196)
chr4 (16-60)||(40413353-40413396)
chr4 (159-187)||(48684504-48684532)
[»] chr8 (3 HSPs)
chr8 (72-237)||(42035455-42035620)
chr8 (110-237)||(12949331-12949458)
chr8 (157-208)||(24964206-24964257)
[»] chr1 (7 HSPs)
chr1 (73-237)||(386590-386754)
chr1 (89-187)||(50011100-50011197)
chr1 (106-179)||(5806217-5806290)
chr1 (106-208)||(17180002-17180103)
chr1 (125-220)||(10462436-10462531)
chr1 (155-187)||(35395321-35395353)
chr1 (139-181)||(30674192-30674234)
[»] chr7 (15 HSPs)
chr7 (13-224)||(26811750-26811961)
chr7 (72-237)||(8232205-8232370)
chr7 (106-237)||(36250607-36250738)
chr7 (106-235)||(45948166-45948295)
chr7 (109-237)||(43988158-43988286)
chr7 (110-236)||(20949533-20949659)
chr7 (113-187)||(47159632-47159704)
chr7 (154-230)||(33800383-33800460)
chr7 (159-208)||(47421036-47421085)
chr7 (154-233)||(38958402-38958481)
chr7 (139-181)||(29005974-29006016)
chr7 (155-188)||(2735554-2735587)
chr7 (145-218)||(34708890-34708963)
chr7 (159-207)||(2735951-2735999)
chr7 (16-60)||(36250531-36250574)
[»] chr2 (7 HSPs)
chr2 (76-237)||(16803322-16803483)
chr2 (76-237)||(16842605-16842766)
chr2 (106-237)||(7293093-7293224)
chr2 (106-236)||(9367940-9368070)
chr2 (111-239)||(34510819-34510946)
chr2 (153-224)||(6150129-6150200)
chr2 (170-233)||(7136891-7136954)
[»] chr3 (4 HSPs)
chr3 (13-183)||(22977650-22977826)
chr3 (134-233)||(49032816-49032916)
chr3 (107-187)||(2032526-2032606)
chr3 (154-233)||(32263233-32263312)
[»] chr5 (5 HSPs)
chr5 (76-208)||(35206134-35206266)
chr5 (76-207)||(35210886-35211017)
chr5 (127-230)||(28613354-28613457)
chr5 (153-224)||(1199579-1199650)
chr5 (140-230)||(35112506-35112598)
[»] scaffold0114 (1 HSPs)
scaffold0114 (106-237)||(37690-37820)
[»] chr6 (1 HSPs)
chr6 (158-233)||(10546709-10546784)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 26 - 237
Target Start/End: Original strand, 52606876 - 52607089
Alignment:
Q  26 tttttctattattactaaaattataactttaaattccttnnnnnnn-ttataactttaaattagttatatatctca-ttttcatagggatattttagtca 123  Q
    |||||| ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||| ||| |||| |||||||||||||||||     
T  52606876 tttttcgattattactaaaattataactttaaattccttgaaaaaaattataactttaaattagttatatatatcactttttatagggatattttagtct 52606975  T
Q  124 ttttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcc 223  Q
    ||||||| ||||||||||||| |||||||  ||||||| ||||||||||||| ||||||||||| ||||||| |||||||||||| |||| |||||||||    
T  52606976 ttttattaaatataaatctttatttccttcaactatcattcataccaaacaattaaaaaatcatcacactttccactcactttcttttcattttctttcc 52607075  T
Q  224 tataacattcattc 237  Q
    ||||||| ||||||    
T  52607076 tataacaatcattc 52607089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 40413318 - 40413187
Alignment:
Q  106 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 205  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||  ||||||| | ||||||||||||||||||||||| ||||||| |||||||||    
T  40413318 atagggatgttttagtcattttattaaatttaaatctttctttcctttcactatcatttataccaaacaactaaaaaatcatcacactttccactcactt 40413219  T
Q  206 tctcttcactttctttcctataacattcattc 237  Q
    ||| ||||||||||||||||||||| ||||||    
T  40413218 tcttttcactttctttcctataacaatcattc 40413187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 237
Target Start/End: Complemental strand, 48316303 - 48316156
Alignment:
Q  90 tatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcatta 189  Q
    |||||||| |||| | |||||||||| | |||||||||||| |||||||||||||||||||||  ||| ||||| |||||||||||||||||||||||      
T  48316303 tatatatcacattcttatagggatatgtcagtcattttattaaatataaatctttctttcctttcactttcactaataccaaacaactaaaaaatcatct 48316204  T
Q  190 cacttttcactcactttctcttcactttctttcctataacattcattc 237  Q
    ||||||  ||||||||||| ||||||||||||||| ||||| ||||||    
T  48316203 cactttctactcactttctattcactttctttcctctaacaatcattc 48316156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 27301543 - 27301666
Alignment:
Q  108 agggatattttagtcattttattga-atataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcacttt 206  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||  ||| |||| ||||||||||||||||| ||||||   |||||| |||| ||||    
T  27301543 agggatattttagtcattttattaacatataaatctttctttccttgcactctcacacataccaaacaactaaacaatcatcctactttttactctcttt 27301642  T
Q  207 ctcttcactttctttcctataaca 230  Q
    ||  |||||||||||||| |||||    
T  27301643 ctactcactttctttcctttaaca 27301666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 53560263 - 53560394
Alignment:
Q  106 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 205  Q
    |||||| ||||||| |||||||||| ||||||| |||||||||||||| | | |||||||||||||||| |||||||| |||  ||||||  |||| | |    
T  53560263 atagggttattttattcattttattaaatataactctttctttccttacattttcactcataccaaacatctaaaaaaccatctcactttctactctcat 53560362  T
Q  206 tctcttcactttctttcctataacattcattc 237  Q
    ||| ||||||||||||||| ||||| ||||||    
T  53560363 tctattcactttctttcctctaacaatcattc 53560394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 52632887 - 52632986
Alignment:
Q  138 aatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacattcattc 237  Q
    |||||||||||||||  ||| ||||| |||||||||||||||||||||||  |||||| ||| |||||||| ||||||||||||||| ||||| ||||||    
T  52632887 aatctttctttcctttcactttcactaataccaaacaactaaaaaatcatctcactttccacccactttctattcactttctttcctctaacaatcattc 52632986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 42150270 - 42150331
Alignment:
Q  163 tcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcct 224  Q
    |||||||||||||||||||||||||  ||||||| | ||| ||||| ||||||||| |||||    
T  42150270 tcataccaaacaactaaaaaatcatctcactttttattcattttctattcactttcattcct 42150331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 12865271 - 12865319
Alignment:
Q  159 tcactcataccaaacaactaaaaaatcattacacttttcactcactttc 207  Q
    ||||| ||||||||||||||||||||||| | ||||| |||||||||||    
T  12865271 tcactaataccaaacaactaaaaaatcatcaaactttccactcactttc 12865319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 18910437 - 18910366
Alignment:
Q  153 atactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcct 224  Q
    ||||||||||| | |||||||||||||| ||||||  || |||||||| |||||||  |||||||| |||||    
T  18910437 atactatcacttaaaccaaacaactaaataatcatctcatttttcacttactttctactcactttcattcct 18910366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 16492112 - 16492196
Alignment:
Q  140 tctttctttcct--tatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttc 222  Q
    ||||||||||||  | |||| |||||| ||||||||||| || |||||||  |||||||  |||||||||| || ||||||||||    
T  16492112 tctttctttcctcttttactttcactcttaccaaacaaccaacaaatcatctcactttttcctcactttctttttactttctttc 16492196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 40413396 - 40413353
Alignment:
Q  16 ggttatgtagtttttctattattactaaaattataactttaaatt 60  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||    
T  40413396 ggttatgtagttttt-tattattaataaaattataacttaaaatt 40413353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 48684504 - 48684532
Alignment:
Q  159 tcactcataccaaacaactaaaaaatcat 187  Q
    |||||||||||||||||||||||||||||    
T  48684504 tcactcataccaaacaactaaaaaatcat 48684532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 72 - 237
Target Start/End: Original strand, 42035455 - 42035620
Alignment:
Q  72 ttataactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaa 171  Q
    ||||||||||||||||| |||||||| | || |  |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||    
T  42035455 ttataactttaaattaggtatatatcaccttcttgtagggatattttagtcattttattaaatataaatctttctttccttctaccatcactcaaaccaa 42035554  T
Q  172 acaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacattcattc 237  Q
    |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||    
T  42035555 acaactaaaaaatcatcacactttccactcactttcttttcactttctttcctataacaatcattc 42035620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 12949458 - 12949331
Alignment:
Q  110 ggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctc 209  Q
    |||||| |||||||||||||| |||||||||||||||||||||  ||| ||| | |||||||||||||||||||||||  ||||||  |||| ||||||     
T  12949458 ggatatattagtcattttattaaatataaatctttctttccttgcactttcattgataccaaacaactaaaaaatcatctcactttctactctctttcta 12949359  T
Q  210 ttcactttctttcctataacattcattc 237  Q
    ||||||||||||||| ||||| ||||||    
T  12949358 ttcactttctttcctctaacaatcattc 12949331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 24964206 - 24964257
Alignment:
Q  157 tatcactcataccaaacaactaaaaaatcattacacttttcactcactttct 208  Q
    ||||||||| |||||||||||||| ||||||  |||||| ||||||||||||    
T  24964206 tatcactcaaaccaaacaactaaataatcatcccactttccactcactttct 24964257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 386590 - 386754
Alignment:
Q  73 tataactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaa 172  Q
    ||||||||||||||||||||||||| | || | ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||    
T  386590 tataactttaaattagttatatatcaccttcttatagggatattttagtcattttaataaatataaatctttctttccttctactatcactcataacaaa 386689  T
Q  173 caactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacattcattc 237  Q
    |||| ||||||||||  |||||| |||||||||||| ||||||||||||||||||||| ||||||    
T  386690 caaccaaaaaatcatcgcactttccactcactttcttttcactttctttcctataacaatcattc 386754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 187
Target Start/End: Original strand, 50011100 - 50011197
Alignment:
Q  89 ttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcat 187  Q
    ||||||||| | |||| |||||||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  50011100 ttatatatcacctttttatagggatattt-agtcattttaataaatataaatctttctttccttctactatcactcatagcaaacaactaaaaaatcat 50011197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 5806217 - 5806290
Alignment:
Q  106 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaa 179  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||  ||| |||||||||||||||||||||    
T  5806217 atagggatattttagtcattttattaaatataaatctttctttccttccactttcactcataccaaacaactaa 5806290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 17180103 - 17180002
Alignment:
Q  106 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 205  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||| ||   |||||||| ||||||||||||||||||||||| ||||||| || ||||||    
T  17180103 atagggatattttagtcattttattaaat-taaatatttctttcgtttccctatcacttataccaaacaactaaaaaatcatcacactttccattcactt 17180005  T
Q  206 tct 208  Q
    |||    
T  17180004 tct 17180002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 10462436 - 10462531
Alignment:
Q  125 tttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctt 220  Q
    |||||| |||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||| || ||| || ||| ||||| |||||||||||    
T  10462436 tttattaaatataaatcttactttccttccactttcactcataccaaacaactaaaaaatcattccattttccattcattttctattcactttctt 10462531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 35395353 - 35395321
Alignment:
Q  155 actatcactcataccaaacaactaaaaaatcat 187  Q
    |||||||||||||||||||||||||||||||||    
T  35395353 actatcactcataccaaacaactaaaaaatcat 35395321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 30674234 - 30674192
Alignment:
Q  139 atctttctttccttatactatcactcataccaaacaactaaaa 181  Q
    |||||||||||||| ||||||| |||||||||||| |||||||    
T  30674234 atctttctttccttctactatccctcataccaaactactaaaa 30674192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 26811961 - 26811750
Alignment:
Q  13 tacggttatgtagtttttctattattactaaaattataactttaaattccttnnnnnnn-ttataactttaaattagttatatatctcattttcataggg 111  Q
    ||||||||| ||||||| | || ||||||||||| ||||||| |||||||||        ||||||||||||||||| |||||||| |||| | || |||    
T  26811961 tacggttatatagtttt-cgatcattactaaaatgataacttcaaattccttaaaaaaaattataactttaaattaggtatatatcacattcttatgggg 26811863  T
Q  112 atattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctctt 211  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||| ||    
T  26811862 atattttagtcattttattaaatataaatctttctttccttctactatcactcataccaaataactaaaaaatcatcacacttctcactaactttctttt 26811763  T
Q  212 cactttctttcct 224  Q
    |||||||||||||    
T  26811762 cactttctttcct 26811750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 72 - 237
Target Start/End: Complemental strand, 8232370 - 8232205
Alignment:
Q  72 ttataactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaa 171  Q
    |||||| |||||||||  || ||||| | |||| ||||||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||||||||    
T  8232370 ttataattttaaattatatacatatcacctttttatagggatattttagtcattttattaaatataaatctttcattcctttcactatcactcataccaa 8232271  T
Q  172 acaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacattcattc 237  Q
    |||||||||||||||||| | ||| |||||||||||| ||||||||||||||||||||| ||||||    
T  8232270 acaactaaaaaatcattagattttccactcactttcttttcactttctttcctataacaatcattc 8232205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 36250607 - 36250738
Alignment:
Q  106 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 205  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||  ||||||| | ||||||||||||||||||||||| ||||||| |||||||||    
T  36250607 atagggatgttttagtcattttattaaatttaaatctttctttcctttcactatcatttataccaaacaactaaaaaatcatcacactttccactcactt 36250706  T
Q  206 tctcttcactttctttcctataacattcattc 237  Q
    ||| ||||||||||||||||||||| ||||||    
T  36250707 tcttttcactttctttcctataacaatcattc 36250738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 45948166 - 45948295
Alignment:
Q  106 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 205  Q
    ||||||||||||||||||||||||| ||||||||||||| || |||| | || ||||| |||||||||||||||||| |||| |||||||||||||||||    
T  45948166 atagggatattttagtcattttattaaatataaatcttttttcccttttcctgtcacttataccaaacaactaaaaattcatcacacttttcactcactt 45948265  T
Q  206 tctcttcactttctttcctataacattcat 235  Q
    | | || |||||||||||||||||| ||||    
T  45948266 tttttttactttctttcctataacaatcat 45948295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 109 - 237
Target Start/End: Complemental strand, 43988286 - 43988158
Alignment:
Q  109 gggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttct 208  Q
    ||||||||| |||||||||||| |||||||||||||||||||||  ||| ||||| |||||||||||||||||||||||  |||||| ||| ||||||||    
T  43988286 gggatatttcagtcattttattaaatataaatctttctttcctttcactttcactaataccaaacaactaaaaaatcatctcactttccacccactttct 43988187  T
Q  209 cttcactttctttcctataacattcattc 237  Q
     ||||||||||||||| ||||| ||||||    
T  43988186 attcactttctttcctctaacaatcattc 43988158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 20949659 - 20949533
Alignment:
Q  110 ggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctc 209  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| ||| | |||||||||||||||||||||||| ||||||   ||| ||||||     
T  20949659 ggatattttagtcattttattaaatataaatctttctttccttacactttcattgataccaaacaactaaaaaatcatttcactttctgctctctttcta 20949560  T
Q  210 ttcactttctttcctataacattcatt 236  Q
    ||||||||||||||| ||||| |||||    
T  20949559 ttcactttctttcctttaacaatcatt 20949533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 47159704 - 47159632
Alignment:
Q  113 tattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcat 187  Q
    |||||||||||||||||| |||||||||||  ||||||||   |||||||| |||||||||||||||||||||||    
T  47159704 tattttagtcattttattaaatataaatct--ctttcctttctctatcacttataccaaacaactaaaaaatcat 47159632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 33800460 - 33800383
Alignment:
Q  154 tactatcactcataccaaacaactaaaa-aatcattacacttttcactcactttctcttcactttctttcctataaca 230  Q
    |||| |||||| || ||||||||||||| ||||||  |||||| || ||||||||||||||||||| ||||| |||||    
T  33800460 tactttcactcctaacaaacaactaaaacaatcatctcactttccattcactttctcttcactttcattcctttaaca 33800383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 47421036 - 47421085
Alignment:
Q  159 tcactcataccaaacaactaaaaaatcattacacttttcactcactttct 208  Q
    |||||||||||||||||||||||||||||  |||||| || |||||||||    
T  47421036 tcactcataccaaacaactaaaaaatcatctcactttccattcactttct 47421085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 38958481 - 38958402
Alignment:
Q  154 tactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacattc 233  Q
    |||| |||||| ||||||||||| || |||||||  ||||||  |||||||||||  | |||||||||||| ||||||||    
T  38958481 tactttcactcttaccaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttcctttaacattc 38958402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 29005974 - 29006016
Alignment:
Q  139 atctttctttccttatactatcactcataccaaacaactaaaa 181  Q
    |||||||||||||| ||||||| |||||||||||| |||||||    
T  29005974 atctttctttccttctactatctctcataccaaactactaaaa 29006016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 2735587 - 2735554
Alignment:
Q  155 actatcactcataccaaacaactaaaaaatcatt 188  Q
    |||||||||||||||||||||| |||||||||||    
T  2735587 actatcactcataccaaacaaccaaaaaatcatt 2735554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 34708890 - 34708963
Alignment:
Q  145 ctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttc 218  Q
    ||||||| ||||||||||| | ||||||||| |||| ||||||  || ||| |||| ||||||| |||||||||    
T  34708890 ctttcctcatactatcacttaaaccaaacaattaaataatcatctcattttccacttactttctattcactttc 34708963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 2735999 - 2735951
Alignment:
Q  159 tcactcataccaaacaactaaaaaatcattacacttttcactcactttc 207  Q
    |||||||||||||||||| ||||||||||   ||||| |||||||||||    
T  2735999 tcactcataccaaacaaccaaaaaatcatctaactttccactcactttc 2735951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 36250531 - 36250574
Alignment:
Q  16 ggttatgtagtttttctattattactaaaattataactttaaatt 60  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||    
T  36250531 ggttatgtagttttt-tattattaataaaattataacttaaaatt 36250574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 16803483 - 16803322
Alignment:
Q  76 aactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaa 175  Q
    ||||||||||||||||||||||   || | ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||    
T  16803483 aactttaaattagttatatatcaacttcttatagggatattttagtcattttaataaatataaatctttctttccttctactatcactcataccaaacaa 16803384  T
Q  176 ctaaaaaatcattacacttttcactcactttctcttcactttctttcctataacattcattc 237  Q
    |||||||||||| ||||||| || ||||||||| ||||||||||||| ||||||| ||||||    
T  16803383 ctaaaaaatcatcacactttccattcactttcttttcactttctttcttataacaatcattc 16803322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 16842766 - 16842605
Alignment:
Q  76 aactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaa 175  Q
    ||||||||||||||||||||||   || | ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||    
T  16842766 aactttaaattagttatatatcaacttcttatagggatattttagtcattttaataaatataaatctttctttccttctactatcactcataccaaacaa 16842667  T
Q  176 ctaaaaaatcattacacttttcactcactttctcttcactttctttcctataacattcattc 237  Q
    |||||||||||| ||||||| || ||||||||| ||||||||||||| ||||||| ||||||    
T  16842666 ctaaaaaatcatcacactttccattcactttcttttcactttctttcttataacaatcattc 16842605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 7293224 - 7293093
Alignment:
Q  106 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 205  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  7293224 atagggatattttagtcattttaataaatataaatatttctttccttctactatcactcataccaaacaactaaaaaatcatcgcactttccactcactt 7293125  T
Q  206 tctcttcactttctttcctataacattcattc 237  Q
    ||| ||||||||||||||||||||| ||||||    
T  7293124 tcttttcactttctttcctataacaatcattc 7293093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 9367940 - 9368070
Alignment:
Q  106 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 205  Q
    |||||| |||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||  ||||||| |||| |||    
T  9367940 atagggttattttagtcattttattaaatataaatatttctttccttacactttcactcataccaaacaactaaaaaatcatctcactttttactctctt 9368039  T
Q  206 tctcttcactttctttcctataacattcatt 236  Q
    ||| ||||||||||||||| ||||| |||||    
T  9368040 tctattcactttctttcctctaacaatcatt 9368070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 34510819 - 34510946
Alignment:
Q  111 gatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctct 210  Q
    |||||||||||||||||||| ||||||||||||||||| |||   |||| | | |||||||||||||||||| |||| |||||||  ||||||||||| |    
T  34510819 gatattttagtcattttattaaatataaatctttcttttctttccctattatttataccaaacaactaaaaa-tcatcacactttctactcactttcttt 34510917  T
Q  211 tcactttctttcctataacattcattcat 239  Q
    |||||||||||||||||||| ||||||||    
T  34510918 tcactttctttcctataacaatcattcat 34510946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 6150200 - 6150129
Alignment:
Q  153 atactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcct 224  Q
    ||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||  |||||||| |||||    
T  6150200 atactatcactcaaaccaaacaactaaataatcatttcactttccactcactttctactcactttcattcct 6150129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 7136954 - 7136891
Alignment:
Q  170 aaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacattc 233  Q
    ||||||||||||||||||  ||||||| ||||||||||| | ||||||| ||||| | ||||||    
T  7136954 aaacaactaaaaaatcatctcactttttactcactttctatccactttcattccttttacattc 7136891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 22977650 - 22977826
Alignment:
Q  13 tacggttatgtagtttttctattattactaaaattataactttaaattccttnnnnnnn-ttataactttaaattagttatatat-----ctcattttca 106  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||| |||        |||||||||||||||||||||||||     | | || |||    
T  22977650 tacggttatgtagtttttcgattcttattaaaattataactttaaattgcttgaaaaaaattataactttaaattagttatatataatatcaccttctca 22977749  T
Q  107 tagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaa 183  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  22977750 tagggatattttagtcattttattaaatataaatctttctttccttctactatcactcataccaaacaaataaaaaa 22977826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 49032816 - 49032916
Alignment:
Q  134 tataaatctttctttccttat-actatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacatt 232  Q
    |||| |||||||||||||  | ||| |||| | ||||||||||||||| ||||||  |||||| |||||||||||| ||||||||| ||||| |||||||    
T  49032816 tatatatctttctttcctcttcactttcacccctaccaaacaactaaacaatcatctcactttccactcactttctattcactttcattcctttaacatt 49032915  T
Q  233 c 233  Q
    |    
T  49032916 c 49032916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 2032606 - 2032526
Alignment:
Q  107 tagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcat 187  Q
    |||||||||||||||| ||||||| || ||   ||||||||||||| |||| | |||  ||||||||||||||| ||||||    
T  2032606 tagggatattttagtccttttattaaacatgtctctttctttccttttactttaacttctaccaaacaactaaataatcat 2032526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 32263312 - 32263233
Alignment:
Q  154 tactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacattc 233  Q
    |||| |||||| ||||||||||| || |||||||  ||||||  |||||||||||  | |||||||||||| ||||||||    
T  32263312 tactttcactcttaccaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttcctttaacattc 32263233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 35206266 - 35206134
Alignment:
Q  76 aactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaa 175  Q
    |||||||||||||||||||||| | || | ||||||||||||||||||||||| | ||||||||| ||||||||||| || ||||| |||||||||||||    
T  35206266 aactttaaattagttatatatcaccttcttatagggatattttagtcattttaataaatataaatttttctttccttctattatcattcataccaaacaa 35206167  T
Q  176 ctaaaaaatcattacacttttcactcactttct 208  Q
    |||||||||||| ||||||| ||||||||||||    
T  35206166 ctaaaaaatcatcacactttccactcactttct 35206134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 35210886 - 35211017
Alignment:
Q  76 aactttaaattagttatatatctcattttcatagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaa 175  Q
    ||||||||||||||||||||||   || | ||||||||||||||||||||||| | ||||||||| ||||||||||| || ||||| |||||||||||||    
T  35210886 aactttaaattagttatatatcatcttcttatagggatattttagtcattttaataaatataaatttttctttccttctattatcattcataccaaacaa 35210985  T
Q  176 ctaaaaaatcattacacttttcactcactttc 207  Q
    |||||||||||| ||||||| |||||||||||    
T  35210986 ctaaaaaatcatcacactttccactcactttc 35211017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 28613354 - 28613457
Alignment:
Q  127 tattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctat 226  Q
    |||| ||||||||| |||||||||||  ||| ||  |||||||||||||||||||||||||   |||||||| ||||||||| ||||||||| ||||| |    
T  28613354 tattaaatataaatatttctttcctttcactttctgtcataccaaacaactaaaaaatcatcttacttttcattcactttctattcactttcattccttt 28613453  T
Q  227 aaca 230  Q
    ||||    
T  28613454 aaca 28613457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 1199579 - 1199650
Alignment:
Q  153 atactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcct 224  Q
    ||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||  |||||||| |||||    
T  1199579 atactatcactcaaaccaaacaactaaataatcatttcactttccactcactttctactcactttcattcct 1199650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 35112506 - 35112598
Alignment:
Q  140 tctttctttcct--tatactatcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataaca 230  Q
    ||||||||||||  | |||| |||||| ||||||||||| || |||||||  ||||||  |||||||||||  | |||||||||||| |||||    
T  35112506 tctttctttcctcttttactttcactcttaccaaacaaccaacaaatcatctcactttctactcactttcttcttactttctttcctttaaca 35112598  T

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Target: scaffold0114 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 37820 - 37690
Alignment:
Q  106 atagggatattttagtcattttattgaatataaatctttctttccttatactatcactcataccaaacaactaaaaaatcattacacttttcactcactt 205  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||  |||||||||||||||||||| | |||||||||| ||||||| |||||||||    
T  37820 atagggatattttagtcattttattaaatataaatctttattttctttcactatcactcataccaaacagcaaaaaaatcatcacactttacactcactt 37721  T
Q  206 tctcttcactttctttcctataacattcattc 237  Q
    | | ||||||||||||||||||||| ||||||    
T  37720 t-ttttcactttctttcctataacaatcattc 37690  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 10546784 - 10546709
Alignment:
Q  158 atcactcataccaaacaactaaaaaatcattacacttttcactcactttctcttcactttctttcctataacattc 233  Q
    |||||||| |||||||||||| ||||||||| |||||   ||||| ||||| | ||||||| ||||| ||||||||    
T  10546784 atcactcaaaccaaacaactagaaaatcatttcacttactactcaatttctatccactttcattcctttaacattc 10546709  T

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