View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2235_high_15 (Length: 238)
Name: NF2235_high_15
Description: NF2235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2235_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20230467 - 20230689
Alignment:
| Q |
1 |
atatgttcgcgtatcctatttagaacttggtattctcttgtttgtaaaagcatttgaaacatatataggtcattaacatgactctgctttaggagttaag |
100 |
Q |
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| T |
20230467 |
atatgttcgcgtatcctatttagaacttggtattctcttgtttgtaaaagcatttgaaacatatataggtcattaacttgactctgctttaggagttaag |
20230566 |
T |
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| Q |
101 |
aactgaattgaatttctcatattttaaatttttcatatacacagataaatggagaaacaagacaatcttcatcacaagtacagtgataattgcaactctt |
200 |
Q |
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| T |
20230567 |
aactgaattgaatttctcatattttaaatttttcatatgcacagataaatggagaaacaagacaatcttcatcgcaattacagtgataattgcaactctt |
20230666 |
T |
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| Q |
201 |
attattgtcatttgtgcatatat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
20230667 |
attattgtcatttgtgcatatat |
20230689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20242417 - 20242642
Alignment:
| Q |
1 |
atatgttcgcgtatcctatttagaacttggtattctcttgtttgtaaaagcatttgaaacatatataggtcattaacatgactctgctttaggagtt--- |
97 |
Q |
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| T |
20242417 |
atatgttcgcgtatcctatttagaacttggtattctcctgtttgtaaaagcattttaaacatatataggtcattaacttgactctgccttaggagttgag |
20242516 |
T |
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| Q |
98 |
----aagaactgaattgaatttctcatattttaaatttttcatatacacagataaatggagaaacaagacaatcttcatcacaagtacagtgataattgc |
193 |
Q |
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| T |
20242517 |
aaataagaactgaattgaatttctcatattttaaatttttcatatacacagata---ggagaaataagacaatcttcatcgcaagtacagggataattgc |
20242613 |
T |
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| Q |
194 |
aactcttattattgtcatttgtgcatata |
222 |
Q |
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| T |
20242614 |
aactcttattattatcatttgcgcatata |
20242642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 20263070 - 20263136
Alignment:
| Q |
157 |
acaagacaatcttcatcacaagtacagtgataattgcaactcttattattgtcatttgtgcatatat |
223 |
Q |
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| T |
20263070 |
acaagacaatcttcatcgcaagtacagtgataattgcaactcttattatcgtcatttgtgcatatat |
20263136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 20169224 - 20169125
Alignment:
| Q |
124 |
ttaaatttttcatatacacagataaatggagaaacaagacaatcttcatcacaagtacagtgataattgcaactcttattattgtcatttgtgcatatat |
223 |
Q |
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| T |
20169224 |
ttaaatttttcatatatacagatagagggagaaacaagacgatcatcattataggtacaacaataattggaaccctcatgattgtcatctgtgcatatat |
20169125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 20272733 - 20272810
Alignment:
| Q |
111 |
aatttctcatattttaaatttttcatatacacagataaatggagaaacaagacaatcttcatcacaagtacagtgata |
188 |
Q |
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||||||| |||||||||| ||| ||| | |||||||| ||||||||||||||||| |||| ||||||||||||| |
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| T |
20272733 |
aatttcttatattttaaaatttcaatagatacagataagaggagaaacaagacaatcatcattttaagtacagtgata |
20272810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 20278482 - 20278578
Alignment:
| Q |
127 |
aatttttcatatacacagataaatggagaaacaagacaatcttcatcacaagtacagtgataattgcaactcttattattgtcatttgtgcatatat |
223 |
Q |
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| T |
20278482 |
aatttttcatctatacagatcgaggaagaaacaagacactcatcattgtaagtacagtcataattggaactctagtaattgttatttgtgcatatat |
20278578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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