View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2235_high_5 (Length: 335)
Name: NF2235_high_5
Description: NF2235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2235_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 45525443 - 45525610
Alignment:
| Q |
29 |
gtggtgtttgaatcacatcagaggtaacatgctccgaagcatcaaatat-tgaccatcatctgtttcacgaataaccattatggcactactatattgttt |
127 |
Q |
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| T |
45525443 |
gtggtgtttgaatcaaatcagaggtaacatgctcccaagcatcaaatatatgaccatcatctgtttcatgaataaccattatggcactgctatattgttt |
45525542 |
T |
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| Q |
128 |
aacttcccttaaaatgtcttcttttaatcgagcttccattttctccactatttcacagtcaataccct |
195 |
Q |
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| T |
45525543 |
agcttcccttaaaatgtcttcttttaatcgagcttccattttctccactctttcacagtcaataccct |
45525610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 1369232 - 1369146
Alignment:
| Q |
29 |
gtggtgtttgaatcacatcagaggtaacatgctccgaagcatcaaatattgaccatcatctgtttcacgaataaccattatggcact |
115 |
Q |
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| T |
1369232 |
gtggtgtttgaatcacatcagaggtaacatattccgaagcatcaaatattgaccatcatctatttcacgaataaccattatggcact |
1369146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 1369099 - 1369046
Alignment:
| Q |
268 |
aatcatcttccttaaatttcacccc-tttcattcttgcaatattgacccctaat |
320 |
Q |
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| T |
1369099 |
aatcatcttccttaaatttcaccccctttcattcttgcaatattgactcctaat |
1369046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 1369144 - 1369095
Alignment:
| Q |
154 |
atcgagcttccattttctccactatttcacagtcaataccctaggaatca |
203 |
Q |
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| T |
1369144 |
atcgagcttccattttctccactatttcacagtcaatactctgggaatca |
1369095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 23572010 - 23571908
Alignment:
| Q |
200 |
atcaaccatagaactgtgggtagaaaattcggtttgaattgaggctgaaga-ttgcaaggtaaaacccaaatcatcttccttaaatttcacccctttcat |
298 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| ||||||| |||||| |
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| T |
23572010 |
atcaaccataaaatcgtgggtagaaaattcggtttgaattgaggctgaagatttgctcggtaaaaccccaatcatcttccttaaacttcacccttttcat |
23571911 |
T |
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| Q |
299 |
tct |
301 |
Q |
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||| |
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| T |
23571910 |
tct |
23571908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 38077042 - 38076874
Alignment:
| Q |
29 |
gtggtgtttgaatcacatcagaggtaacatgctccgaagcatcaaatat-tgaccatcatctgtttcacgaataaccattatggcactactatattgttt |
127 |
Q |
| |
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|||| |||||||| ||||||||||| || |||||| |||||||| |||| || ||||| ||||||||| ||||||||||||||||| | ||| || | |
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| T |
38077042 |
gtggggtttgaattacatcagaggttacttgctcccaagcatcatatatctgcccatcgtctgtttcatgaataaccattatggcattgtcatactgctc |
38076943 |
T |
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| Q |
128 |
aacttcccttaaaatgtcttcttttaatcgagcttccattttctccactatttcacagtcaatacccta |
196 |
Q |
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| ||||||||| || ||||||||||| || ||||||||||||||||| |||||| | |||| ||||| |
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| T |
38076942 |
agcttcccttaggatatcttcttttaaccgggcttccattttctccaccctttcacggccaattcccta |
38076874 |
T |
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