View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2235_low_1 (Length: 522)

Name: NF2235_low_1
Description: NF2235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2235_low_1
NF2235_low_1
[»] chr8 (10 HSPs)
chr8 (218-507)||(9032743-9033032)
chr8 (18-148)||(39655604-39655737)
chr8 (18-152)||(17028434-17028569)
chr8 (18-152)||(17558870-17559005)
chr8 (34-151)||(21347198-21347316)
chr8 (63-149)||(31183821-31183907)
chr8 (18-55)||(1788900-1788937)
chr8 (18-55)||(38676893-38676930)
chr8 (20-55)||(17088771-17088806)
chr8 (18-55)||(21185322-21185359)
[»] chr4 (6 HSPs)
chr4 (29-146)||(44643542-44643660)
chr4 (18-71)||(20058087-20058141)
chr4 (18-55)||(13010534-13010571)
chr4 (18-55)||(895522-895559)
chr4 (18-55)||(6667720-6667757)
chr4 (18-55)||(6671392-6671429)
[»] chr1 (7 HSPs)
chr1 (18-146)||(12141561-12141690)
chr1 (18-148)||(4242476-4242607)
chr1 (18-150)||(51465564-51465695)
chr1 (18-146)||(24981072-24981200)
chr1 (72-146)||(1953802-1953876)
chr1 (95-151)||(26310464-26310520)
chr1 (18-55)||(9111542-9111579)
[»] chr7 (6 HSPs)
chr7 (18-146)||(39426361-39426489)
chr7 (18-150)||(3850445-3850577)
chr7 (18-146)||(22301061-22301189)
chr7 (18-146)||(11674080-11674201)
chr7 (18-55)||(31210076-31210113)
chr7 (18-55)||(31206627-31206664)
[»] chr5 (2 HSPs)
chr5 (18-151)||(26702921-26703055)
chr5 (18-151)||(26972654-26972788)
[»] chr2 (5 HSPs)
chr2 (18-146)||(14433508-14433637)
chr2 (18-146)||(18739029-18739149)
chr2 (18-55)||(2590580-2590617)
chr2 (18-55)||(21189481-21189518)
chr2 (18-55)||(35969278-35969315)
[»] chr3 (1 HSPs)
chr3 (55-146)||(11634076-11634167)
[»] chr6 (6 HSPs)
chr6 (18-146)||(19697762-19697883)
chr6 (22-118)||(15518100-15518197)
chr6 (82-151)||(19976193-19976262)
chr6 (97-148)||(6591757-6591808)
chr6 (18-66)||(6591838-6591887)
chr6 (82-147)||(19973805-19973870)
[»] scaffold0028 (2 HSPs)
scaffold0028 (18-55)||(127779-127816)
scaffold0028 (18-54)||(110200-110236)
[»] scaffold0076 (1 HSPs)
scaffold0076 (18-57)||(6759-6798)
[»] scaffold0014 (1 HSPs)
scaffold0014 (18-146)||(82701-82822)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 218 - 507
Target Start/End: Original strand, 9032743 - 9033032
Alignment:
Q  218 gtgataattccacatctaattttacaatagagtatagagtatgtacaacatttcagtaacacatgatgtcccttcggacggcaacacatttttgatttcc 317  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  9032743 gtgataattccacatctaattttacaatagagcatagagtatgtacaacatttcagtaacacatgatgtcccttcggatggcaacacatttctgatttcc 9032842  T
Q  318 ctttcacaacattaccttattatgtaaccattgttactgatacatcaagacagatgaaaaatcaaggtaaagcacagaacatcaaataacattcagatga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9032843 ctttcacaacattaccttattatgtaaccattgttactgatacatcaagacagatgaaaaatcaaggtaaagcacagaacatcaaataacattcagatga 9032942  T
Q  418 taaagggaaatatgtgacagacttgtatatgtaatagatttggaattgttgtaatcagagtcagatcaatattggatcactcatcctatg 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  9032943 taaagggaaatatgtgacagacttgtatatgtaatagatttggaattgttataatcagagtcagatcaatattggatccctcatcctatg 9033032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 39655737 - 39655604
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaa--gtttcctctaatctgatttgtgaagattttgat 114  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||   |||||||| ||| ||||||||||||||||||||    
T  39655737 ataaaatcctcaaggacagtgactatgtcacgcctcaggttacttaacagtgtgttgttttgcacaggtttcctccaatttgatttgtgaagattttgat 39655638  T
Q  115 ggagttgtgtcagcaactaaattcgataagtttc 148  Q
    |||| |||||| ||||  ||||||||||||||||    
T  39655637 ggagctgtgtcggcaatcaaattcgataagtttc 39655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 17028434 - 17028569
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgg 116  Q
    |||||||||||||||||||||||| |||| |||||||| |||| ||| ||| | |||||||||| |||| | ||||| ||||||||||||||||||||||    
T  17028434 ataaaatcctcaaggacagtgactgtgtcacgcctcaggttacataatagtattttgttttgcaggttttccctaatttgatttgtgaagattttgatgg 17028533  T
Q  117 agttgtgtcagcaactaaattcgataagtttcttga 152  Q
    ||| || | | |||||||||||||||||||||||||    
T  17028534 agtcgtatgaacaactaaattcgataagtttcttga 17028569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 17558870 - 17559005
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgg 116  Q
    |||||||||||||||||||||||| |||| |||||||| |||| ||| ||| | |||||||||| |||| | ||||| ||||||||||||||||||||||    
T  17558870 ataaaatcctcaaggacagtgactgtgtcacgcctcaggttacataatagtattttgttttgcaggttttccctaatttgatttgtgaagattttgatgg 17558969  T
Q  117 agttgtgtcagcaactaaattcgataagtttcttga 152  Q
    ||| || | | |||||||||||||||||||||||||    
T  17558970 agtcgtatgaacaactaaattcgataagtttcttga 17559005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 21347198 - 21347316
Alignment:
Q  34 cagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaact 132  Q
    |||||||||| || |||||||| |||||||||||| ||  |||||||| ||||||| |||| |||||||||||||||||||| ||| ||||||  ||||     
T  21347198 cagtgactatatcacgcctcaggttacttaacagtttgcagttttgcaggtttcctttaatttgatttgtgaagattttgatagagctgtgtcgacaacc 21347297  T
Q  133 aaattcgataagtttcttg 151  Q
    ||||| ||||| |||||||    
T  21347298 aaatttgataaatttcttg 21347316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 31183821 - 31183907
Alignment:
Q  63 acagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttct 149  Q
    ||||||||||| |||||| ||||| |||||  |||||| ||||||||||||||||| ||||||  |||| |||||||||||||||||    
T  31183821 acagtgtgttgatttgcaggtttcttctaagttgatttatgaagattttgatggagctgtgtctacaaccaaattcgataagtttct 31183907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 1788937 - 1788900
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  1788937 ataaaatcctcaaggacagtgactatgtcacgcctcag 1788900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 38676893 - 38676930
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  38676893 ataaaatcctcaaggacagtgactatgtcacgcctcag 38676930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 17088806 - 17088771
Alignment:
Q  20 aaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17088806 aaaatcctcaaggacagtgactatgtcacgcctcag 17088771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 21185359 - 21185322
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  21185359 ataaaatcctcaaggacagtgactatgtcacgcttcag 21185322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 29 - 146
Target Start/End: Original strand, 44643542 - 44643660
Alignment:
Q  29 aaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcag 127  Q
    |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| | |||| |    
T  44643542 aaggacagtgactatgtcacgcctcaggttacttaacagcgtgttgttttgcaagtttcttctaatttgatttgtgaagattttgatggagctttgtcgg 44643641  T
Q  128 caactaaattcgataagtt 146  Q
    |||| ||||||||||||||    
T  44643642 caaccaaattcgataagtt 44643660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 20058141 - 20058087
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgt 71  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  20058141 ataaaatcctcaaggacagtgactatgtcacgcctcaggttacataacagtgtgt 20058087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 13010571 - 13010534
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  13010571 ataaaatcctcaaggacagtgactatgtcacgcctcag 13010534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 895522 - 895559
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    ||||||||||||||||||||||||||||| || |||||    
T  895522 ataaaatcctcaaggacagtgactatgtcacgactcag 895559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 6667757 - 6667720
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  6667757 ataaaatcctcaagaacagtgactatgtcacgcctcag 6667720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 6671429 - 6671392
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  6671429 ataaaatcctcaaggacggtgactatgtcacgcctcag 6671392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 12141690 - 12141561
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgg 116  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| || ||||| | |||| |||||||||||||||||||||     
T  12141690 ataaaatcctcaaggacagtgactatgtcacgcctcaggttacttaacggtgtgttgttttacatgtttcttttaatttgatttgtgaagattttgatga 12141591  T
Q  117 agttgtgtcagcaactaaattcgataagtt 146  Q
    || |||||| ||||| ||||||||||||||    
T  12141590 agatgtgtcggcaaccaaattcgataagtt 12141561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 4242607 - 4242476
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgg 116  Q
    ||||||||||||||||||  || |||||| || ||||| ||||||||||||||| ||||||||| |||||||| ||| ||||||| ||||||||||||||    
T  4242607 ataaaatcctcaaggacaacgattatgtcacgtctcaggttacttaacagtgtgctgttttgcaggtttcctccaatttgatttgcgaagattttgatgg 4242508  T
Q  117 agttgtgtcagcaactaaattcgataagtttc 148  Q
    |||||||||  |||| |||||| |||||||||    
T  4242507 agttgtgtcgacaaccaaattcaataagtttc 4242476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 51465564 - 51465695
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgg 116  Q
    ||||||||  ||||||||||||||||||| |||||||| |||||| ||||||| |||||||  | |||||||||| | |||||||||||||||  |||||    
T  51465564 ataaaatctccaaggacagtgactatgtcacgcctcagattactttacagtgtattgttttttaggtttcctctactttgatttgtgaagatt--gatgg 51465661  T
Q  117 agttgtgtcagcaactaaattcgataagtttctt 150  Q
    || |||||| ||||| ||||||||||||||||||    
T  51465662 agctgtgtcggcaaccaaattcgataagtttctt 51465695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 24981200 - 24981072
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgg 116  Q
    |||||||||||||||||  |||||||||| ||||||| ||||| ||| ||| | |||||||||| |||||| |||||   |||||||||| ||||| |||    
T  24981200 ataaaatcctcaaggacgctgactatgtcacgcctcaggttacataatagtattttgttttgcaggtttcccctaattaaatttgtgaaggttttg-tgg 24981102  T
Q  117 agttgtgtcagcaactaaattcgataagtt 146  Q
    | |||||||  |||||||||||||||||||    
T  24981101 aattgtgtcgacaactaaattcgataagtt 24981072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 1953802 - 1953876
Alignment:
Q  72 tgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 146  Q
    ||||||| | |||||||||| | |||||||||||||||||||||| | |||||| ||||| ||||||||||||||    
T  1953802 tgttttgtaggtttcctctactttgatttgtgaagattttgatggggctgtgtcggcaaccaaattcgataagtt 1953876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 26310464 - 26310520
Alignment:
Q  95 tgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 151  Q
    |||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||    
T  26310464 tgatttgtgacgattttgatggagctgtgtcaacaaccaaattcgataagtttcttg 26310520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 9111579 - 9111542
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  9111579 ataaaatcctcaaggacagtgactatgtcacgcctcag 9111542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 39426489 - 39426361
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgg 116  Q
    |||||||||||||||||||||||||| || |||||||| ||||||||||||| ||| ||||| | |||||||||| | ||||||||||| ||||||||||    
T  39426489 ataaaatcctcaaggacagtgactatatcacgcctcagattacttaacagtgcgttattttgtaggtttcctctactttgatttgtgaaaattttgatgg 39426390  T
Q  117 agttgtgtcagcaactaaattcgataagtt 146  Q
     |||||||| ||||| ||||||||||||||    
T  39426389 -gttgtgtccgcaaccaaattcgataagtt 39426361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 3850577 - 3850445
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgg 116  Q
    |||||||| |||||||||||||||||||| |||||||| |||| ||||||||||||||||| || |||||||||||| |||||||| ||||  |||||||    
T  3850577 ataaaatcatcaaggacagtgactatgtcacgcctcagattacataacagtgtgttgttttacaggtttcctctaatttgatttgtaaaga-cttgatgg 3850479  T
Q  117 agttgtgtcagcaactaaattcgataagtttctt 150  Q
    ||   |||| ||||||||||| ||||||||||||    
T  3850478 agccctgtcggcaactaaatttgataagtttctt 3850445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 22301189 - 22301061
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgg 116  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||| ||| | |||||||||| |||||| ||||  |||||||||||| |||||||||    
T  22301189 ataaaatcctcaaggacagtgactatgtcacgcctcaggttacataatagtattttgttttgcaggtttcc-ctaaattgatttgtgaaggttttgatgg 22301091  T
Q  117 agttgtgtcagcaactaaattcgataagtt 146  Q
    | |  ||||  |||| ||||||||||||||    
T  22301090 aatcatgtcgacaaccaaattcgataagtt 22301061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 11674080 - 11674201
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgga 117  Q
    ||||||||||||||||||||||||||||| | ||||||  |       |||| |||||||||| |||||| |||||   |||||||||| ||||||||||    
T  11674080 ataaaatcctcaaggacagtgactatgtcacacctcaggaa-------gtgttttgttttgcaggtttcccctaattaaatttgtgaaggttttgatgga 11674172  T
Q  118 gttgtgtcagcaactaaattcgataagtt 146  Q
    || |||||  |||||||||||||||||||    
T  11674173 gtcgtgtcgacaactaaattcgataagtt 11674201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 31210113 - 31210076
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  31210113 ataaaatcctcaaggacagtgactatgtcacgcctcag 31210076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 31206664 - 31206627
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  31206664 ataaaatcctcaaagacagtgactatgtcacgcctcag 31206627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 26703055 - 26702921
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgg 116  Q
    ||||||||||||||||||||||||| ||| ||| |||| |||| ||||||||| |||||| ||| |||||||||||| |||||||||||| |||||||||    
T  26703055 ataaaatcctcaaggacagtgactaagtcacgcatcaggttacataacagtgttttgtttagcaggtttcctctaatttgatttgtgaaggttttgatgg 26702956  T
Q  117 agttgtgtcagcaactaaattcgataagtttcttg 151  Q
    |||| ||||  | || ||||||||||| |||||||    
T  26702955 agttatgtcgacgaccaaattcgataaatttcttg 26702921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 26972788 - 26972654
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgg 116  Q
    ||||||||||||||||||||||||| ||| ||| |||| |||| ||||||||| |||||| ||| |||||||||||| |||||||||||| |||||||||    
T  26972788 ataaaatcctcaaggacagtgactaagtcacgcatcaggttacataacagtgttttgtttagcaggtttcctctaatttgatttgtgaaggttttgatgg 26972689  T
Q  117 agttgtgtcagcaactaaattcgataagtttcttg 151  Q
    |||| ||||  | || ||||||||||| |||||||    
T  26972688 agttatgtcgacgaccaaattcgataaatttcttg 26972654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 14433637 - 14433508
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag-ttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgg 116  Q
    ||||||||| ||||||||||||||||||| |||||||| |||| ||||||||| |||||||||| ||||| |||||| | ||||||||||||||||||||    
T  14433637 ataaaatccacaaggacagtgactatgtcacgcctcaggttacataacagtgtattgttttgcaggtttcttctaatttaatttgtgaagattttgatgg 14433538  T
Q  117 agttgtgtcagcaactaaattcgataagtt 146  Q
    ||   ||||  ||| |||||||||||||||    
T  14433537 agccatgtcgacaattaaattcgataagtt 14433508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 18739149 - 18739029
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgga 117  Q
    ||||||||||||||||||||||||||||| |||||||       |  ||||| |||||||||| |||||| |||||   |||||||||| ||||||||||    
T  18739149 ataaaatcctcaaggacagtgactatgtcacgcctca-------agaagtgttttgttttgcaggtttcc-ctaattaaatttgtgaaggttttgatgga 18739058  T
Q  118 gttgtgtcagcaactaaattcgataagtt 146  Q
    || |||||  |||||||||||||||||||    
T  18739057 gtcgtgtcgacaactaaattcgataagtt 18739029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 2590580 - 2590617
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  2590580 ataaaatcctcaaggacagtgactatgtcacgcctcag 2590617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 21189481 - 21189518
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  21189481 ataaaatcctcaaggacagtgactatgtcacgcctcag 21189518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 35969315 - 35969278
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  35969315 ataaaatcttcaaggacagtgactatgtcacgcctcag 35969278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 11634167 - 11634076
Alignment:
Q  55 gttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtt 146  Q
    ||||| |||||  ||||||||||||| |||||||||||| ||||||||||||||||||||| || |||||| ||||  ||||||||||||||    
T  11634167 gttacataacaacgtgttgttttgcaggtttcctctaatttgatttgtgaagattttgatgaagctgtgtctgcaatcaaattcgataagtt 11634076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 19697883 - 19697762
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgga 117  Q
    |||||||||||||||||| |||||||||| ||||||||| |       |||| |||||||||| |||||| |||||   |||||||||| ||||||||||    
T  19697883 ataaaatcctcaaggacaatgactatgtcacgcctcagtaa-------gtgttttgttttgcaggtttcccctaattaaatttgtgaaggttttgatgga 19697791  T
Q  118 gttgtgtcagcaactaaattcgataagtt 146  Q
    || |||||  |||||||||||||||||||    
T  19697790 gtcgtgtcgacaactaaattcgataagtt 19697762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 15518100 - 15518197
Alignment:
Q  22 aatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctct-aatctgatttgtgaagattttgatggag 118  Q
    |||||||||||| |||||||||||| || ||  |||||||||||||||||||||||||| ||||||| | |||  ||||||||||||||| |||||||    
T  15518100 aatcctcaaggaaagtgactatgtcacgtctaggttacttaacagtgtgttgttttgcaggtttcctataaattagatttgtgaagatttcgatggag 15518197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 19976193 - 19976262
Alignment:
Q  82 gtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttcttg 151  Q
    |||| |||| || |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||    
T  19976193 gttttctcttatttgatttgtgaagattttgatggagttttgtcggcaacaaaattcgataagtttcttg 19976262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 6591808 - 6591757
Alignment:
Q  97 atttgtgaagattttgatggagttgtgtcagcaactaaattcgataagtttc 148  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  6591808 atttgtgaagattttgatggagctgtgtcggcaaccaaattcgataagtttc 6591757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 6591887 - 6591838
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctca-gttacttaacag 66  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  6591887 ataaaatcctcaaggacagtgactacgtcacgcctcaggttacttaacag 6591838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 19973805 - 19973870
Alignment:
Q  82 gtttcctctaatctgatttgtgaagattttgatggagttgtgtcagcaactaaattcgataagttt 147  Q
    |||| |||| || |||||||  ||||||||||||||||| | || ||||| |||||||||||||||    
T  19973805 gttttctcttatttgatttggaaagattttgatggagttttctcggcaacaaaattcgataagttt 19973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 127779 - 127816
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcag 55  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  127779 ataaaatcctcaaggacagtgactatgtcacgcctcag 127816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 110200 - 110236
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctca 54  Q
    ||||||||||||||||||||||||||||| |||||||    
T  110200 ataaaatcctcaaggacagtgactatgtcacgcctca 110236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 6798 - 6759
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcagtt 57  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  6798 ataaaatcctcaatgacagtgactatgtcacgcctcagtt 6759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 82701 - 82822
Alignment:
Q  18 ataaaatcctcaaggacagtgactatgtcgcgcctcagttacttaacagtgtgttgttttgcaagtttcctctaatctgatttgtgaagattttgatgga 117  Q
    |||||||||||||||| |||||||||||| ||||||||         ||||| ||| |||||| |||| ||| |||   |||||||||| ||||||||||    
T  82701 ataaaatcctcaaggatagtgactatgtcacgcctcag-------gaagtgttttgatttgcaggttttctcaaattaaatttgtgaaggttttgatgga 82793  T
Q  118 gttgtgtcagcaactaaattcgataagtt 146  Q
     | |||||  ||||||||||||| |||||    
T  82794 atcgtgtcgacaactaaattcgacaagtt 82822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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