View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2235_low_11 (Length: 259)
Name: NF2235_low_11
Description: NF2235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2235_low_11 |
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| [»] scaffold0210 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 6849506 - 6849371
Alignment:
| Q |
8 |
tgagatgaaccaaaggagtatcctcattaatacaccccatacatagatcaatatttacatgtttgatggaagatagattgctctctctcccacgtagtct |
107 |
Q |
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| T |
6849506 |
tgagaagaacaaaaggagtatccgcatcaatagaccccatatttaaatcaatatttacatgtttgacggaagagagattgctctctctcccacgtagttt |
6849407 |
T |
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| Q |
108 |
cagatcaggaatatcccctgtacaaccaaagacaaa |
143 |
Q |
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| T |
6849406 |
tagattaggaatatcccccgtacaaccaaagacaaa |
6849371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 244
Target Start/End: Complemental strand, 6889859 - 6889666
Alignment:
| Q |
54 |
atcaatatttacatgtttgatggaagatagattgctctctctcccacgtagtctcagatcaggaatatcccctgtacaaccaaagacaaaggtgcaaaga |
153 |
Q |
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| T |
6889859 |
atcaatctttacatgtttgacagaagagagattgctctctatcccatgtagtttcagagcaggaaaacctccgatacaaacaaagacaaaggtgcaaaga |
6889760 |
T |
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| Q |
154 |
cttggagtagataactcgattttgccatattggt--ggtgatacact-tttaaagttaaattggcaagtgtagcacttgatatgcagaggtttt |
244 |
Q |
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| T |
6889759 |
cttggagtagataactcgattttgccataattgtaggcccaaccagtgtctaaagttaaattggcaagtgtagcacttaatatccagaggtttt |
6889666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 54 - 244
Target Start/End: Complemental strand, 6844858 - 6844671
Alignment:
| Q |
54 |
atcaatatttacatgtttgatggaagatagattgctctctctcccacgtagtctcagatcaggaatatcccctgtacaaccaaagacaaaggtgcaaaga |
153 |
Q |
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| T |
6844858 |
atcaatctttacatgtttgacagaagagagatttctctctatcccatgtagtttcagagcaggaatattcccctcacaaacaaagacaaaggtgcaaaga |
6844759 |
T |
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| Q |
154 |
cttggagtagataactcgattttgccatattggtggtgatacacttttaaagttaaattggcaagtgtagcacttgatatgcagaggtttt |
244 |
Q |
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| T |
6844758 |
cttggagtagataactcaattttgtcatatttattgtgtt---tttctatagttaaatcatcaagtgtagcacttgatatacagaggtttt |
6844671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 6849210 - 6849109
Alignment:
| Q |
141 |
aaaggtgcaaagacttggagtagataactcgattttgccatattggtggtgatacacttttaaagttaaattggcaagtgtagcacttgatatgcagagg |
240 |
Q |
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| T |
6849210 |
aaaggtgcaaagacttggagtagataactcgattatgccg-attagtagtgatacg-ttttaaagttaaattggcaagtgtagcacttgatatgcagagg |
6849113 |
T |
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| Q |
241 |
tttt |
244 |
Q |
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|||| |
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| T |
6849112 |
tttt |
6849109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 30597579 - 30597694
Alignment:
| Q |
55 |
tcaatatttacatgtttgatggaagatagattgctctctctcccacgtagtctcagatcaggaatatcccctgtacaaccaaagacaaaggtgcaaagac |
154 |
Q |
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||||||||||||||||||| ||||| || ||| | | |||| || |||| ||| | |||||||| || | |||| ||||| |||||||| |||||| |
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| T |
30597579 |
tcaatatttacatgtttgacagaagagaggttgattttgctcctacatagtttcaaaacaggaataccctcataacaaacaaagtcaaaggtgaaaagac |
30597678 |
T |
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| Q |
155 |
ttggagtagataactc |
170 |
Q |
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| T |
30597679 |
ttggagtagataactc |
30597694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 15863 - 15899
Alignment:
| Q |
208 |
aaattggcaagtgtagcacttgatatgcagaggtttt |
244 |
Q |
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| T |
15863 |
aaattggcaagtgtggcacttgatatgtagaggtttt |
15899 |
T |
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