View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2235_low_14 (Length: 238)
Name: NF2235_low_14
Description: NF2235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2235_low_14 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 21150828 - 21150697
Alignment:
| Q |
5 |
gtgggagatgacggttttatgatcctctaggctctttcgattcatgataggttcagctgttatatcataatctttaagtattgtatccctattaggaaca |
104 |
Q |
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| T |
21150828 |
gtgggagatgatggttttatgatcctctaggctctttcgattcataataggttcagctgttataccaggatctttaagtattatatccctgttaggagct |
21150729 |
T |
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| Q |
105 |
acaccatcagccacatattcagtgttttcttg |
136 |
Q |
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| T |
21150728 |
acatcgtcagccacatattcagtgttttcttg |
21150697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 33726424 - 33726341
Alignment:
| Q |
138 |
tcctttgggagaaggagaaggatccacttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtagtggt |
221 |
Q |
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| T |
33726424 |
tcctttgggagaaggagaaggatccacttcattaatatctgaagccttctctttgacgggctcattatttggagaggtagtggt |
33726341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 33726638 - 33726502
Alignment:
| Q |
7 |
gggagatgacggttttatgatcctctaggctctttcgattcatgataggttcagctgttatatcataatctttaagtattgtatccc---tattaggaac |
103 |
Q |
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| T |
33726638 |
gggagatgtcggttttatgatcctcttggctctttcgattcacaataggttcagcttttatatcagaatccttaagtattgtatcactagtactaggagc |
33726539 |
T |
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| Q |
104 |
aacaccatcagccacatattcagtgttttcttgatcc |
140 |
Q |
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| T |
33726538 |
tacatcatcagccacagtttcagtttcttcttgatcc |
33726502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 21150692 - 21150635
Alignment:
| Q |
164 |
cttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtagtggt |
221 |
Q |
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| T |
21150692 |
cttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggcagtggt |
21150635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 21140401 - 21140308
Alignment:
| Q |
10 |
agatgacggttttatgatcctctaggctctttcgattcatgataggttcagctgttatatcataatc-tttaagtattgtatccctattaggaa |
102 |
Q |
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| T |
21140401 |
agatgacagttttatgatactcttggctctttcgattcgcgatagtttcagcttttaaatcagaatcttttaagtattgtatcactattaggaa |
21140308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 21241737 - 21241801
Alignment:
| Q |
157 |
ggatccacttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtagtggt |
221 |
Q |
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| T |
21241737 |
ggatacacttcatgaatatcagaagcattctctttgacagagtcataatttgcagaggtagtggt |
21241801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 33714308 - 33714267
Alignment:
| Q |
177 |
agaagcattctctttgacaggctcattatttgtagaggtagt |
218 |
Q |
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| T |
33714308 |
agaagcattctctttgacaggctcattatttgtagaggtagt |
33714267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 21286971 - 21286911
Alignment:
| Q |
157 |
ggatccacttcatgaatatcagaagcattctctttgacaggctcattatttgtagaggtag |
217 |
Q |
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| T |
21286971 |
ggatccacttcatgaatatcagaagcattctctatgacagagtcataatttgcagaggtag |
21286911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 53912 - 53952
Alignment:
| Q |
79 |
taagtattgtatccctattaggaacaacaccatcagccaca |
119 |
Q |
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| T |
53912 |
taagtattgtatcactattaggagcaacatcatcagccaca |
53952 |
T |
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