View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2235_low_2 (Length: 469)
Name: NF2235_low_2
Description: NF2235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2235_low_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 29334085 - 29333627
Alignment:
| Q |
1 |
tactgtatcctaaaactatatgaaattccaacaactcaggtccatgtgataagaagagctcaagtaactagtcgcaaataacaactttgaccagacagaa |
100 |
Q |
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|||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |
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| T |
29334085 |
tactatatcgtaaaactatatgaaattccaacaactcatgtccatgtgataagaagagctcaagtaaccacccgcaaataacaactttgactagacagaa |
29333986 |
T |
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| Q |
101 |
ctgagtaacgggtttttactgccactacattaacccccattaaccctatataataagagaaaaacccttcttcacaaattacaatactgccactgtcttt |
200 |
Q |
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| T |
29333985 |
ctga---acgggtttttactgccactacattaaccc----------tatataataagagaaaaacccttcttcacaaattacaatactgccactgtcttt |
29333899 |
T |
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| Q |
201 |
cttctaaaattcaacagaaaagctgacgtggaacgccgccataacagaatgaaactgaaattcacttttccctccaaaaaccgccaccgaacctccactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29333898 |
cttctaaaattcaacagaaaagctgacgtggaacgccgccataacagaatgaaactgaaattcacttttccctccaaaaaccgccaccgaacctccactt |
29333799 |
T |
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| Q |
301 |
ccgcctccgtcacatctccgccaccgc---cgccacctccaccactagaatcttcacttcgcaaccctttcgaaccggatataaacccgccaccgcgcaa |
397 |
Q |
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||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29333798 |
ccgcctccgtcacctctccaccaccgccgccgccacctccaccgctagaatcttcccttcgcaaccctttcgaaccggatataaacccgccaccgcgcaa |
29333699 |
T |
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| Q |
398 |
ctacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaaccaagacgaatcactcctccatggctt |
469 |
Q |
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| T |
29333698 |
ctacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaaccaagacgaatcactcctccatggctt |
29333627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 463
Target Start/End: Complemental strand, 29322533 - 29322442
Alignment:
| Q |
372 |
ccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaaccaagacgaatcactcctcca |
463 |
Q |
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|||||||||||||| |||| |||||| |||||||||||||| | ||||| |||| ||||||||| | |||||||| |||||||| |||| |
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| T |
29322533 |
ccggatataaacccaccactgcgcaatcacttggaagaaataatgaacaagagaaggcgcatcgaacacaaccaagataaatcactcatcca |
29322442 |
T |
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