View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2235_low_20 (Length: 225)
Name: NF2235_low_20
Description: NF2235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2235_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 20230068 - 20230218
Alignment:
| Q |
13 |
atactcagagtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20230068 |
atactcagagtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtg |
20230167 |
T |
|
| Q |
113 |
aacatacaggaatggaatagaaacaactggactggcgggggtggtaggcgg |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
20230168 |
aacatacaggaatggaatagaaacaactggactggcgggtgtgttaggcgg |
20230218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 20302236 - 20302361
Alignment:
| Q |
20 |
gagtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatac |
119 |
Q |
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|||||||||||||||||| | || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
20302236 |
gagtgtgatgtttatggtatttgcggggcatttgcaatttgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccaatcaacatac |
20302335 |
T |
|
| Q |
120 |
aggaatggaatagaaacaactggact |
145 |
Q |
| |
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||||||||||||||||||| |||||| |
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| T |
20302336 |
aggaatggaatagaaacaattggact |
20302361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 20064173 - 20064046
Alignment:
| Q |
17 |
tcagagtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaaca |
116 |
Q |
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| T |
20064173 |
tcagagtgtgatgtatatggtacatgtggggcatttgcaagctgtagttcattgaacacaccaatatgcagctgtttgaaaggatttgaacctaggagca |
20064074 |
T |
|
| Q |
117 |
tacaggaatggaatagaaacaactggac |
144 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
20064073 |
tacaggaatggaatagaaacaactggac |
20064046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 20242023 - 20242166
Alignment:
| Q |
18 |
cagagtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacat |
117 |
Q |
| |
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|||| ||||||||||||||||||||||| | |||||||||||||||||||||||| | ||| ||||||| ||||||||||| ||||| || || | |
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| T |
20242023 |
cagaatgtgatgtttatggtctatgtggagattttacaagctgtaattcattgagctcaccagtttgcagttgtttgaaaggatttgaacccagaaatac |
20242122 |
T |
|
| Q |
118 |
acaggaatggaatagaaacaactggactggcgggggtggtaggc |
161 |
Q |
| |
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| ||||||| |||||||||||||||||||||| ||| ||||| |
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| T |
20242123 |
tcgtgaatggagtagaaacaactggactggcgggtgtgttaggc |
20242166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 20262656 - 20262801
Alignment:
| Q |
18 |
cagagtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacat |
117 |
Q |
| |
|
|||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||| | || | ||||| ||||||||||| ||||| || || | |
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| T |
20262656 |
cagaatgtgatgtttatggtctctgtggagaatttacaagctgtaattcattgagctcaccggtatgcagttgtttgaaaggatttgaacccagaaatac |
20262755 |
T |
|
| Q |
118 |
acaggaatggaatagaaacaactggactggcgggggtggtaggcgg |
163 |
Q |
| |
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| ||||||| |||||||||||||||||||||| ||| ||||||| |
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|
| T |
20262756 |
tcgtgaatggagtagaaacaactggactggcgggtgtgttaggcgg |
20262801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 20293031 - 20293118
Alignment:
| Q |
17 |
tcagagtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttg |
104 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||| ||||||||| |||||||||| | ||||| || |||||||||| ||| |||| |
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| T |
20293031 |
tcagagtgtgatgtttatggtatatgtggggcctttgcaagctgtagttcattgagctcaccaatatgtagctgtttgagaggatttg |
20293118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 20282544 - 20282599
Alignment:
| Q |
15 |
actcagagtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattg |
70 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
20282544 |
actcagagtgtgatgcttatggtatatgtggggcatttgcaagctgtaattcattg |
20282599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 20272224 - 20272312
Alignment:
| Q |
17 |
tcagagtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttga |
105 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| ||| ||||| ||||| || | | ||||| ||||||||| ||||||| ||||| |
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|
| T |
20272224 |
tcagagtgtgatgtttatggtatatgtggcgcatttgcaatctgtagttcatcgacctcaccaatatgcagctgtctgaaaggatttga |
20272312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 20300160 - 20300290
Alignment:
| Q |
17 |
tcagagtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaaca |
116 |
Q |
| |
|
||||||||||||| ||||||| |||| |||| |||| ||||||||| |||| | || | |||||||||| ||||||||||| ||||| || | | |
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| T |
20300160 |
tcagagtgtgatggttatggtatatgcggggtatttgcaagctgtagttcactaagttcaccaatttgcacctgtttgaaagaatttgaacccaagtcga |
20300259 |
T |
|
| Q |
117 |
tacaggaatggaatagaaacaactggactgg |
147 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |
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|
| T |
20300260 |
tacaagaatggaatagaaacaattggactgg |
20300290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 20287673 - 20287790
Alignment:
| Q |
30 |
tttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacaggaatggaa |
129 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| |||||||| ||||| ||||| ||||||| ||| ||||| || ||||| |||||| ||||| |
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|
| T |
20287673 |
tttatggtatatgtggggcattcgcaagctgtagttcattgaagttaccaatatgcagttgtttgagaggatttgaacccaggaacaaacaggagtggaa |
20287772 |
T |
|
| Q |
130 |
tagaaacaactggactgg |
147 |
Q |
| |
|
|||| ||||||||||||| |
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|
| T |
20287773 |
tagacacaactggactgg |
20287790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 20169710 - 20169626
Alignment:
| Q |
21 |
agtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttga |
105 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||| ||||||||||||||| | |||| || |||||||||| ||||||||| |
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|
| T |
20169710 |
agtgtgatgtttacgacttatgtggggcatttgcaagttgtaattcattgagctcaccaacatgtagctgtttgagagggtttga |
20169626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 20277971 - 20278021
Alignment:
| Q |
20 |
gagtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattg |
70 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
20277971 |
gagtgtgatgtttacggtatatgtggggcatttgcaagctgtagttcattg |
20278021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 19937428 - 19937536
Alignment:
| Q |
23 |
tgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagg |
122 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||||||||||||| ||| | ||||| || |||||||||||||||||||| || ||||| | ||| |
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| T |
19937428 |
tgtgatgtttatggtgtatgtggacattttgcaagctgtaattcacaaagctcaccaatatgtagctgtttgaaagggtttgagccaaggaacaaagagg |
19937527 |
T |
|
| Q |
123 |
aatggaata |
131 |
Q |
| |
|
||||||||| |
|
|
| T |
19937528 |
aatggaata |
19937536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 19968567 - 19968675
Alignment:
| Q |
23 |
tgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagg |
122 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||||||||||||| ||| | ||||| || |||||||||||||||||||| || ||||| | ||| |
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|
| T |
19968567 |
tgtgatgtttatggtgtatgtggacattttgcaagctgtaattcacaaagctcaccaatatgtagctgtttgaaagggtttgagccaaggaacaaagagg |
19968666 |
T |
|
| Q |
123 |
aatggaata |
131 |
Q |
| |
|
||||||||| |
|
|
| T |
19968667 |
aatggaata |
19968675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 40825472 - 40825351
Alignment:
| Q |
23 |
tgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgtttgaaagggtttgatccggtgaacatacagg |
122 |
Q |
| |
|
||||| ||||||||| |||||||||||||| ||||||||| |||||||| || || ||||| ||||||| ||| ||||| || ||||| ||||| |
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|
| T |
40825472 |
tgtgacgtttatggtatatgtggggcattttcaagctgtagttcattgaagttaccgatatgcagttgtttgagaggatttgaacccaggaacaaacagg |
40825373 |
T |
|
| Q |
123 |
aatggaatagaaacaactggac |
144 |
Q |
| |
|
| ||||||||| |||||||||| |
|
|
| T |
40825372 |
agtggaatagacacaactggac |
40825351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 40820806 - 40820734
Alignment:
| Q |
21 |
agtgtgatgtttatggtctatgtggggcatttacaagctgtaattcattgagcacgccaatttgcagctgttt |
93 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||||||| || ||||||| ||||||| || |||||||| |
|
|
| T |
40820806 |
agtgtgatgtttatggtatatgtgcagcatttgcaagctgtagtttattgagctcgccaatatgtagctgttt |
40820734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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