View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2236_low_2 (Length: 236)
Name: NF2236_low_2
Description: NF2236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2236_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9084547 - 9084326
Alignment:
| Q |
1 |
aaggtaaaataaataaaacacaaaatgcttgatctctatcacttctttgaaagtccttcatagcctttgaatcataaaagtgatatatgaaacaggacaa |
100 |
Q |
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| T |
9084547 |
aaggtaaaataaataaaacacaaaatgcttgatctctatcacttctttgaaagtccttcatagcctttgaatcataaaagtgatacatgaaacaagacaa |
9084448 |
T |
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| Q |
101 |
ttatgtgatataaattcatttaaagcaaggtaggaaaattaaattgacatataaaagaaactatttacttgcactcaagaatcttttgagaacgactcag |
200 |
Q |
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| T |
9084447 |
ttatgtgatataaattcatttaaagcaaggtaggaaaattaaattgacatataaaagaaactacttacttgcactccagaatcttttgagaacgactcag |
9084348 |
T |
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| Q |
201 |
aaacattaatagaagttgttgt |
222 |
Q |
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| T |
9084347 |
aaacattaatagaagttgttgt |
9084326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 9079359 - 9079254
Alignment:
| Q |
120 |
ttaaagcaaggtaggaaaattaaattgacata---taaaagaaactatttacttgcactcaagaatcttttgagaacgactcagaaacattaatagaagt |
216 |
Q |
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| T |
9079359 |
ttaaagcaaggtaggaaaataaaattgatatactataaaagaaactatttacttgcactccaaaatcttttgagaatgactcagaaacattaatagaagt |
9079260 |
T |
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| Q |
217 |
tgttgt |
222 |
Q |
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|||||| |
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| T |
9079259 |
tgttgt |
9079254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9079435 - 9079354
Alignment:
| Q |
1 |
aaggtaaaataaataaaacacaaaatgcttgatctctat--cacttctttgaaagtccttcatagcctttgaatcataaaag |
80 |
Q |
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| T |
9079435 |
aaggtaaaaggactaaaatacaacctgcttgatctctatgtcacttctttggaagtccttccaagcctttgaatcattaaag |
9079354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 10538408 - 10538531
Alignment:
| Q |
90 |
aaacaggacaattatgtgatataaatt--catttaaagcaaggtaggaaaattaaattgacatataaaagaaactatttacttgcactcaagaatctttt |
187 |
Q |
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||||| |||||||| |||||||||||| |||| || ||||||||| || |||| || ||||| |||||||||| |||||||||| ||| ||| || |
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| T |
10538408 |
aaacaagacaattaggtgatataaattgccattaaagccaaggtagggaagttaatctgtcatat-aaagaaactacttacttgcac---agagtctgtt |
10538503 |
T |
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| Q |
188 |
gagaacgactcagaaacattaatagaag |
215 |
Q |
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| T |
10538504 |
gagaccaactcagaaacatcaatagaag |
10538531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 10895041 - 10894987
Alignment:
| Q |
160 |
actatttacttgcactcaagaatcttttgagaacgactcagaaacattaatagaa |
214 |
Q |
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| T |
10895041 |
actacttacttgcactctcgaatctcttgagaccgactcagaaacatcaatagaa |
10894987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 27963579 - 27963639
Alignment:
| Q |
156 |
agaaactatttacttgcactcaagaatcttttgagaacgactcagaaacattaatagaagt |
216 |
Q |
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| T |
27963579 |
agaaactacttacttgcacgtcagaatctcttgagaccgactcagaaacatcaatggaagt |
27963639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 24051259 - 24051133
Alignment:
| Q |
90 |
aaacaggacaattatgtgatataaatt--catttaaagcaaggtaggaaaattaaattgacatataaaagaaactatttacttgcactcaagaatctttt |
187 |
Q |
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||||| |||||||| | |||||||||| |||| || ||||| ||| || |||| ||| |||||||| ||||||| ||||||||||| ||||||| || |
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| T |
24051259 |
aaacaagacaattaggcgatataaattgccattaaagccaaggaagggaagttaatttgtcatataaa-gaaactacctacttgcactccagaatctctt |
24051161 |
T |
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| Q |
188 |
gagaacgactcagaaacattaatagaag |
215 |
Q |
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|||| | |||||||||||| |||||||| |
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| T |
24051160 |
gagaccaactcagaaacatcaatagaag |
24051133 |
T |
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