View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2237_high_1 (Length: 398)
Name: NF2237_high_1
Description: NF2237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2237_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 49320810 - 49320449
Alignment:
| Q |
14 |
cataggttgtgatctgca-aagacctgaaccttctaaactcttagggagagtaacaatattccaattaatcatannnnnnnnnna----atcttcttcac |
108 |
Q |
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| T |
49320810 |
cataggttgtgatctgcacaagacctgaaccttctaaactcttagggagagtaacaatattccaattaatcatatgtttttttttttttatcttcttcac |
49320711 |
T |
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| Q |
109 |
catcaccccatattaaacctctctggattttttcaacctcatgcatgtaacttattggaattttcatggacatcgtatgataatcaaggatggttgaaaa |
208 |
Q |
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| T |
49320710 |
catcaccccatattaaacctctctggattttttcaacctcatgcatgtaacttattggaattttcatggacatcgtatgataatcaaggatggttgaaaa |
49320611 |
T |
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| Q |
209 |
acttctttagataaagtggtccttcatgcaatagagagttgttttgcctttcatcttgcaacttcttctcaattttctcaatcaattaattaaaaccaac |
308 |
Q |
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| T |
49320610 |
acttctttagataaa-----------tgcaatagagagttgttttgcctttcatcatgcaacttcttctcaattttctcaatcaaataattaaaaccaac |
49320522 |
T |
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| Q |
309 |
tttcttgtgagctctattaaaagttgaaattccaaggtataatcataaaaatgaaacgttagtatatcgggag |
381 |
Q |
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| T |
49320521 |
tttcttgtgagctctattaaaagttgaaattccaaggtatattcataaaaatgaaacgttagtatatcgggag |
49320449 |
T |
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