View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2237_high_3 (Length: 304)
Name: NF2237_high_3
Description: NF2237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2237_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 293
Target Start/End: Complemental strand, 1880222 - 1879945
Alignment:
| Q |
15 |
agaatcatgaacctagaaaataaacaacaaaattttagagaatacacacgaatatactttnnnnnnnnntacacttgaatataagatgaaaaactctcaa |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |||| ||||||| |
|
|
| T |
1880222 |
agaatcatgaacctcaaaaataaacaacaaaattttagagaatacacatgaatatactttaaaaaaaa-tatacttgaatataagataaaaacctctcaa |
1880124 |
T |
|
| Q |
115 |
tattcaacaggttatttcgagcaagaactcagataagaaaacatgttctaattgataagtgaggaactaagtgctctgacttaagtggttaacagacgaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1880123 |
tattcaacaggttatttcgagcaagaactcaaataagaaaacatgttctaattgataagggaggaactaagtgctctgacttaagtggttaacacacgaa |
1880024 |
T |
|
| Q |
215 |
ttgtttaggaaaaccaagttcgatatccgagtagaacaattttttaccaaactttattagcttttcaatcgaatttcat |
293 |
Q |
| |
|
|||||||||| |||| | |||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
1880023 |
ttgtttaggagaaccgaattcgattctcgaatagaacaattttttaccaaactttattaacttttcgatcgaatttcat |
1879945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 1886872 - 1886832
Alignment:
| Q |
102 |
gaaaaactctcaatattcaacaggttatttcgagcaagaac |
142 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
1886872 |
gaaaaactctcaatattcaacatgttctttcaagcaagaac |
1886832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University