View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2237_high_7 (Length: 224)
Name: NF2237_high_7
Description: NF2237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2237_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 875953 - 876130
Alignment:
| Q |
38 |
agtaactatatctctcaatatctatttatttccctctcacgatgttaaataaaggtgtaaatatctgcaaaacatttcacaattgtgtaatgcacacgca |
137 |
Q |
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| T |
875953 |
agtaactatatctctcaatatctatttatttccctatcacgatgttaaataaaggtgtaaatatctgcaaaacatttcacaattgtgtaatgcacacgca |
876052 |
T |
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| Q |
138 |
ttccaccacgcccaatttttgagt---caacaactagtgtggcggtgcattaatttaacaaaactcaaattcatctct |
212 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
876053 |
ttccaccacgcccattttttgagtcaacaacaactagtgtggcggtgcattaatttaacaaaactcaaattcatctct |
876130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 1237230 - 1237407
Alignment:
| Q |
38 |
agtaactatatctctcaatatctatttatttccctctcacgatgttaaataaaggtgtaaatatctgcaaaacatttcacaattgtgtaatgcacacgca |
137 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1237230 |
agtaactatatctctcaatatctatttatttccctatcacgatgttaaataaaggtgtaaatatctgcaaaacatttcacaattgtgtaatgcacacgca |
1237329 |
T |
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| Q |
138 |
ttccaccacgcccaatttttgagt---caacaactagtgtggcggtgcattaatttaacaaaactcaaattcatctct |
212 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1237330 |
ttccaccacgcccattttttgagtcaacaacaactagtgtggcggtgcattaatttaacaaaactcaaattcatctct |
1237407 |
T |
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