View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2237_low_11 (Length: 213)

Name: NF2237_low_11
Description: NF2237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2237_low_11
NF2237_low_11
[»] chr2 (2 HSPs)
chr2 (1-178)||(8009181-8009360)
chr2 (139-197)||(8009347-8009405)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 8009181 - 8009360
Alignment:
Q  1 taaatcataatcaagatttgaattttctttagggagtaaaatcaacttaagagcgtgtaccnnnnnnnnnnnnnnnntcaacttaagagtgagtgatatt 100  Q
    ||||||| ||||||||||  ||||||  |||||||||||||||||||||||||||||||||                |||||||||||||||||||||||    
T  8009181 taaatcacaatcaagattcaaatttttgttagggagtaaaatcaacttaagagcgtgtaccaaaacaaaaaataaaatcaacttaagagtgagtgatatt 8009280  T
Q  101 taaaacaaannnnnnnnc--ggtataagtgtgagagccttatgttgatcatttttctttttagggaatgtagatcatttt 178  Q
    |||||||||           ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8009281 taaaacaaatttttttttttggtttaagcgtgagagccttatgttgatcatttttctttttagggaatgtagatcatttt 8009360  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 8009347 - 8009405
Alignment:
Q  139 atgttgatcatttttctttttagggaatgtagatcattttattggtattaggtactatc 197  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8009347 atgtagatcatttttctttttagggaatgtagatcattttattggtattaggtactatc 8009405  T

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