View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2237_low_14 (Length: 206)
Name: NF2237_low_14
Description: NF2237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2237_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 36156306 - 36156193
Alignment:
| Q |
19 |
tagctactatttgtcttcaactatatatataagaaaataacatacataaattatcaaactaacccaa-tttaattaactgacacataagtaaaataaaaa |
117 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |
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| T |
36156306 |
tagctactatttgtcttcaactatatatttaagaaaataacatacataaattatcaaactaacccaattttaattatctaactcataagtaaaataaaaa |
36156207 |
T |
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| Q |
118 |
ataattgagttaga |
131 |
Q |
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| T |
36156206 |
ttaattgagttaga |
36156193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 36156030 - 36155945
Alignment:
| Q |
108 |
aaaataaaaaataattgagttagagttaaatttcctatttatattccactaaacatgcaaaatcttatctctattgaattcttctc |
193 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |
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| T |
36156030 |
aaaataaaaattaattgagttagagttaaatttcctatttttattctactaaacaagcaaaatcttatctctattgaatttttctc |
36155945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 36429636 - 36429589
Alignment:
| Q |
65 |
taaattatcaaactaacccaatttaattaactgacacataagtaaaat |
112 |
Q |
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|||| |||||||||||||||||||||| |||||| ||||||| ||||| |
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| T |
36429636 |
taaactatcaaactaacccaatttaatcaactgatacataagcaaaat |
36429589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 5100816 - 5100883
Alignment:
| Q |
41 |
atatatataagaaaataacatac---ataaattatcaaactaacccaatttaattaactgacacataa |
105 |
Q |
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| T |
5100816 |
atatatttaggaaaataacataccccataaattatcaaattaatcatatttaattaactgacacataa |
5100883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 19997214 - 19997140
Alignment:
| Q |
40 |
tatatatataagaaaataacataca---taaattatcaaactaacccaatttaattaactgacacataagtaaaat |
112 |
Q |
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| T |
19997214 |
tatatatataagaaaataa-atagaagataaattatcaaattaaccaaatttaattaactgacgcataagcaaaat |
19997140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 8901547 - 8901625
Alignment:
| Q |
35 |
tcaactatatatataagaaaataacat---acataaattatcaaactaacccaatttaattaactgacacataagtaaaat |
112 |
Q |
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|||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||| |
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| T |
8901547 |
tcaattatatatttaagaaaataacatgcaacataaattatcaaactaa--aaatttaattagttgacacataagcaaaat |
8901625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 8915393 - 8915454
Alignment:
| Q |
35 |
tcaactatatatataagaaaataacatacataaattatcaaactaacccaatttaattaact |
96 |
Q |
| |
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|||| ||||||| ||| |||||||||||||| |||||| ||||| || ||| |||||||||| |
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| T |
8915393 |
tcaattatatatttaataaaataacatacatgaattatgaaacttactcaaattaattaact |
8915454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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