View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2237_low_3 (Length: 358)
Name: NF2237_low_3
Description: NF2237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2237_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 348
Target Start/End: Original strand, 41198381 - 41198719
Alignment:
| Q |
10 |
ctaccaaactttgcaaggaggtgtgtcttctcgagtaaataggttatttagtctttgaagttatgattatcagtcaactttattcctaaatttcacgaaa |
109 |
Q |
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| T |
41198381 |
ctaccaaactttgcaaggaggtgtgtcttctcgagtaaataggttatttagtctttgaagttatgattatcagtcaactttattcctaaatttcacgaaa |
41198480 |
T |
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| Q |
110 |
tagcaaaattgtctctcaatttgcttcacgtctattaaatgagttcattcgccaaatcataatgttaaccacaatggcatacattgttaatgttgatgtg |
209 |
Q |
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| T |
41198481 |
tagcaaaattgtctctcaatatgcttcatgtctattaaacgagttcatttgccaaatcataatgtgaaccacaatggcatacattgttaatgttgatgtg |
41198580 |
T |
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| Q |
210 |
tccgtccacgtcacttcacatgcatgcatggaccaatttgatagtgagttttgacatcgtcaaaaatctataagttgatagacatggacggtgacgtgcc |
309 |
Q |
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| T |
41198581 |
tccgtccacatcacttcacatgcatgcatggaccaatttgatagtgagttttgacatcgtcaaaaatctataagttgatagacatggacggtgacatgcc |
41198680 |
T |
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| Q |
310 |
gaacacatcggtgattagcaatgcacatcatatcctatg |
348 |
Q |
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| T |
41198681 |
gaacacatcggtgattagcaatgcacatcatatcttatg |
41198719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 6249322 - 6249360
Alignment:
| Q |
115 |
aaattgtctctcaatttgcttcacgtctattaaatgagt |
153 |
Q |
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| T |
6249322 |
aaattgtctctaaatttgcttcatgtctattaaatgagt |
6249360 |
T |
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