View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2237_low_4 (Length: 316)
Name: NF2237_low_4
Description: NF2237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2237_low_4 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 39035 - 38747
Alignment:
| Q |
20 |
ttttggaactactaattagagtatcatagtattaaattagatgatgaatgattgtattgaatatgttgtcacaggtgtccacttctaagacgattagtct |
119 |
Q |
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| T |
39035 |
ttttgggactactaattagagtattatagtattaaattcgatgatgaatgattgtattgaatatgttgtcacaggtgtccacttctaagacgattagtct |
38936 |
T |
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| Q |
120 |
tcgtatcttggaacagaatcaacaaagtggtaatgcgaaaggctattatgggatggaaagatctagagtcaatgacaatgcctaccatagaatatccaaa |
219 |
Q |
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| T |
38935 |
tcgtatcttggaacagaatcaacaaagtggtaatgcgaaaggctattaaaggatggaaagatctagagtcaatgacaatgcctaccatagaatatccaaa |
38836 |
T |
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| Q |
220 |
ttatatttttcaagaaatttcaaggagttgcaagaaattcagagaactcaaggttatgggacgtttaaatttgcaatttgcttcatctc |
308 |
Q |
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| T |
38835 |
ttatatttttcaagaaatttcaaggagttgcaagaaattcagagaactcaaggttatgggacgtttaaatttgcaatttgcttcatctc |
38747 |
T |
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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 279
Target Start/End: Original strand, 45656078 - 45656266
Alignment:
| Q |
91 |
caggtgtccacttctaagacgattagtcttcgtatcttggaacagaatcaacaaagtggtaatgcgaaaggctattatgggatggaaagatctagagtca |
190 |
Q |
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| T |
45656078 |
caggtgtccacttgtaagacgactagtctttgtatcgtggaaccgaataaaaagaatgggaattcgaaaggcaattagaggctggaaagatcttgagtct |
45656177 |
T |
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| Q |
191 |
atgacaatgcctaccatagaatatccaaattatatttttcaagaaatttcaaggagttgcaagaaattcagagaactcaaggttatggg |
279 |
Q |
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| T |
45656178 |
atgacaatgccaggcatatataatccccgatatgtttttgaagaaatctcaaagcattgcaagaactttagagaactcaaggttatggg |
45656266 |
T |
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