View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2237_low_8 (Length: 260)

Name: NF2237_low_8
Description: NF2237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2237_low_8
NF2237_low_8
[»] chr4 (2 HSPs)
chr4 (38-160)||(7285419-7285541)
chr4 (184-260)||(7285528-7285603)
[»] chr5 (2 HSPs)
chr5 (38-141)||(6838637-6838739)
chr5 (164-198)||(6837589-6837623)
[»] chr1 (2 HSPs)
chr1 (38-141)||(16000070-16000172)
chr1 (165-198)||(16001187-16001220)
[»] chr6 (2 HSPs)
chr6 (39-141)||(13307656-13307757)
chr6 (39-141)||(14596119-14596220)
[»] chr7 (2 HSPs)
chr7 (41-142)||(21282652-21282752)
chr7 (164-198)||(22348261-22348295)
[»] chr8 (1 HSPs)
chr8 (164-198)||(306412-306446)
[»] chr3 (1 HSPs)
chr3 (164-198)||(22598821-22598855)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 7285419 - 7285541
Alignment:
Q  38 gtcttcacctcaaagagctttaaaatgtaaagaatgcatcaaaatgtcaaggataacatgtataaaaacacttttgtcttgacgtttccactaagtggaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7285419 gtcttcacctcaaagagctttaaaatgtaaagaatgcatcaaaatgtcaaggataacgtgtataaaaacacttttgtcttgacgtttccactaagtggaa 7285518  T
Q  138 ttcaatgaatttgacttgtttct 160  Q
    |||||||| ||||||||||||||    
T  7285519 ttcaatgagtttgacttgtttct 7285541  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 7285528 - 7285603
Alignment:
Q  184 tttgacttgtttctcttttgnnnnnnncaatgaattttagaaattggacaagtcttaattggagcagaaactggtca 260  Q
    ||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  7285528 tttgacttgtttctcttttgtttttt-caataaattttagaaattggacaagtcttaattggagcagaacctggtca 7285603  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 6838739 - 6838637
Alignment:
Q  38 gtcttcacctcaaagagctttaaaatgtaaagaatgcatcaaaatgtcaaggataacatgtataaaaacacttttgtcttgacgtttccactaagtggaa 137  Q
    ||||||||||||||||||||| |||| ||||||||||||  | ||||||||||||||||||| |||||||  |||||||||| |||||||||| ||||||    
T  6838739 gtcttcacctcaaagagctttgaaatttaaagaatgcattgatatgtcaaggataacatgta-aaaaacatgtttgtcttgatgtttccactaggtggaa 6838641  T
Q  138 ttca 141  Q
    ||||    
T  6838640 ttca 6838637  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 6837623 - 6837589
Alignment:
Q  164 tatttgatattgcttaattatttgacttgtttctc 198  Q
    |||||||||||||||||||||||||||||||||||    
T  6837623 tatttgatattgcttaattatttgacttgtttctc 6837589  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 141
Target Start/End: Original strand, 16000070 - 16000172
Alignment:
Q  38 gtcttcacctcaaagagctttaaaatgtaaagaatgcatcaaaatgtcaaggataacatgtataaaaacacttttgtcttgacgtttccactaagtggaa 137  Q
    ||||||||||||||||||||| |||| | |||||| |||  | ||||||||||||||||||| |||||||  ||||||||||||||||||||| ||||||    
T  16000070 gtcttcacctcaaagagctttgaaatttcaagaatacattgatatgtcaaggataacatgta-aaaaacatgtttgtcttgacgtttccactaggtggaa 16000168  T
Q  138 ttca 141  Q
    ||||    
T  16000169 ttca 16000172  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 16001187 - 16001220
Alignment:
Q  165 atttgatattgcttaattatttgacttgtttctc 198  Q
    ||||||||||||||||||||||||||||||||||    
T  16001187 atttgatattgcttaattatttgacttgtttctc 16001220  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 13307656 - 13307757
Alignment:
Q  39 tcttcacctcaaagagctttaaaatgtaaagaatgcatcaaaatgtcaaggataacatgtataaaaacacttttgtcttgacgtttccactaagtggaat 138  Q
    |||||||| |||||||||| |||||  |||||||||||  ||||||||||||||||||| | |||| ||| |||||||||| ||| |||||| |||||||    
T  13307656 tcttcaccacaaagagcttcaaaattcaaagaatgcatagaaatgtcaaggataacatgca-aaaagcacctttgtcttgatgttcccactaggtggaat 13307754  T
Q  139 tca 141  Q
    |||    
T  13307755 tca 13307757  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 14596220 - 14596119
Alignment:
Q  39 tcttcacctcaaagagctttaaaatgtaaagaatgcatcaaaatgtcaaggataacatgtataaaaacacttttgtcttgacgtttccactaagtggaat 138  Q
    |||||||| |||||||| | |||||  |||||||||||  |||||||||||||| |||| | |||| ||| |||||||||| ||| |||||| |||||||    
T  14596220 tcttcaccacaaagagcatcaaaattcaaagaatgcatagaaatgtcaaggatagcatgca-aaaagcacctttgtcttgatgttcccactaggtggaat 14596122  T
Q  139 tca 141  Q
    |||    
T  14596121 tca 14596119  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 21282752 - 21282652
Alignment:
Q  41 ttcacctcaaagagctttaaaatgtaaagaatgcatcaaaatgtcaaggataacatgtataaaaacacttttgtcttgacgtttccactaagtggaattc 140  Q
    |||||| | |||||| |||||||  |||||||||||  |||| |||||||||||||| | |||| ||| |||||||||| ||| |||||| |||||||||    
T  21282752 ttcaccacgaagagcattaaaattcaaagaatgcatagaaatctcaaggataacatgca-aaaatcacatttgtcttgatgttcccactaggtggaattc 21282654  T
Q  141 aa 142  Q
    ||    
T  21282653 aa 21282652  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 22348261 - 22348295
Alignment:
Q  164 tatttgatattgcttaattatttgacttgtttctc 198  Q
    |||||||||||||||||||||||||||||||||||    
T  22348261 tatttgatattgcttaattatttgacttgtttctc 22348295  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 306446 - 306412
Alignment:
Q  164 tatttgatattgcttaattatttgacttgtttctc 198  Q
    |||||||||||||||||||||||||||||||||||    
T  306446 tatttgatattgcttaattatttgacttgtttctc 306412  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 22598821 - 22598855
Alignment:
Q  164 tatttgatattgcttaattatttgacttgtttctc 198  Q
    |||||||||||||||||||||||||||||||||||    
T  22598821 tatttgatattgcttaattatttgacttgtttctc 22598855  T

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