View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2237_low_9 (Length: 250)
Name: NF2237_low_9
Description: NF2237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2237_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 39829782 - 39830019
Alignment:
| Q |
1 |
atgtaagtttgagagaattgtataaaagttgttgtaaaatggttgtataaatattatttttcttttatttaatagtaaaaagtgttaacggaagcaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39829782 |
atgtaagtttgagagaattgtataaaagttgttgtaaaatgattgtataaatatcatctctcttttatttaatagtaaaaagtgttaacagaagcaatga |
39829881 |
T |
|
| Q |
101 |
----taaagacatgccttgaacttgtgaagtttatagtttctcatatacttagagaaaccaatatttttgttgatcctcttgtatttgtgaaaacttttt |
196 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39829882 |
actataaagacatgccttgaacctgtgaagtttatagtttctcatatacttagagaaaccaatatttttgtagatcctcttgtatttgtgaaaacttttt |
39829981 |
T |
|
| Q |
197 |
ctttaattagaaaagtctttctaattgtaggttttatc |
234 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39829982 |
ctttaattagaaaagtctctctaattgtaggttttatc |
39830019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 20508378 - 20508427
Alignment:
| Q |
10 |
tgagagaattgtataaaagttgttgtaaaatggttgtataaatattattt |
59 |
Q |
| |
|
||||||| |||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
20508378 |
tgagagagttgtataaaagttgttataaaatagttgtataaatattattt |
20508427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 37966623 - 37966583
Alignment:
| Q |
24 |
aaaagttgttgtaaaatggttgtataaatattatttttctt |
64 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
37966623 |
aaaagttgttttaaaatggttgtataaatatcatttctctt |
37966583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 36907086 - 36907044
Alignment:
| Q |
24 |
aaaagttgttgtaaaatggttgtataaatattatttttctttt |
66 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| |||||| |
|
|
| T |
36907086 |
aaaagttgttataaaatggttgtataaatatcatttctctttt |
36907044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 38296682 - 38296730
Alignment:
| Q |
11 |
gagagaattgtataaaagttgttgtaaaatggttgtataaatattattt |
59 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
38296682 |
gagaaaattgtacaaaagttgtactaaaatggttgtacaaatattattt |
38296730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 32621852 - 32621804
Alignment:
| Q |
11 |
gagagaattgtataaaagttgttgtaaaatggttgtataaatattattt |
59 |
Q |
| |
|
|||||| || |||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
32621852 |
gagagagttatataaaagttgtcataaaatggttgtataaatatcattt |
32621804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 20541153 - 20541105
Alignment:
| Q |
18 |
ttgtataaaagttgttgtaaaatggttgtataaatattatttttctttt |
66 |
Q |
| |
|
||||| ||||||||| |||||||||| |||||||||||||| |||||| |
|
|
| T |
20541153 |
ttgtaaaaaagttgtcataaaatggttttataaatattatttctctttt |
20541105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University