View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2238_high_1 (Length: 596)
Name: NF2238_high_1
Description: NF2238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2238_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Original strand, 47501219 - 47501774
Alignment:
| Q |
18 |
attaacagcagcaacaatggttgggcttcaaagcattcccgggcttgtcatactttacggaagcctagtgaagaaaacatgggctataaactcagctttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47501219 |
attaacagcagcaacaatggttgggcttcaaagcattcccgggcttgtcatactttacggaagcctagtgaagaaaacatgggctataaactcagctttc |
47501318 |
T |
|
| Q |
118 |
atggccttctatgcatttgcatccgttctcctttgttgggtttcatgggcataccaaatgtcatttggggagaaaatggtatttttcttagggaaaccaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47501319 |
atggccttctatgcatttgcatccgttctcctttgttgggtttcatgggcataccaaatgtcatttggggagaaaatggtatttttcttagggaaaccaa |
47501418 |
T |
|
| Q |
218 |
atgtagcattagatgaaaagtttttgttggggaaagcatttttggggaattttcctaatgctacaatggtattttatcaaggtgttttcgctggtcttac |
317 |
Q |
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| T |
47501419 |
atgtagcattagatgaaaagtttttgttggggaaagcatttttggggaattttcctaatgctacaatggtattttatcaaggtgttttcgctggtcttac |
47501518 |
T |
|
| Q |
318 |
tttgattttgatagctggtgctttacttgggagaatgaacattcgtgcatggatgttgtttgtgccactttgggttacattctcgtacactgttgttgcc |
417 |
Q |
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| T |
47501519 |
tttgattttgatagctggtgctttacttgggagaatgaacattcgtgcatggatgttgtttgtgccactttgggttacattctcgtacactgttgttgcc |
47501618 |
T |
|
| Q |
418 |
tttagtatttggtgtcctgatggttggttggctaaacgtggggttattgattttgctgggggatatgttattcacctctctgctggtgttgctggtttta |
517 |
Q |
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| T |
47501619 |
tttagtatttggtgtcctgatggttggttggctaaacgtggggttattgattttgctgggggatatgttattcacctctctgctggtgttgctggtttta |
47501718 |
T |
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| Q |
518 |
ctgctgcttattgggtgcgtgcgtgtattatcttcatatatatttgcttgttttttcaat |
577 |
Q |
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| T |
47501719 |
ctgctgcttattgg----gtgcgtgtattatcttcatatatatttgcttgttttttcaat |
47501774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 533
Target Start/End: Complemental strand, 25670994 - 25670924
Alignment:
| Q |
463 |
attgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggt |
533 |
Q |
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| T |
25670994 |
attgattattctggtggttatgttattcatctttcttctggaattgctggtttcactgctgcttattgggt |
25670924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 268 - 429
Target Start/End: Complemental strand, 13350111 - 13349950
Alignment:
| Q |
268 |
tttcctaatgctacaatggtattttatcaaggtgttttcgctggtcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcat |
367 |
Q |
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||||| |||||||| ||| | | || |||| ||||||| |||| | |||||||||||||||||||||||||| | | |||||||||||| | ||| | |
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| T |
13350111 |
tttccaaatgctactatgatttattttcaatgtgtttttgctgctattactttgattttgatagctggtgctgtgttggggagaatgaacttctatgctt |
13350012 |
T |
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| Q |
368 |
ggatgttgtttgtgccactttgggttacattctcgtacactgttgttgcctttagtatttgg |
429 |
Q |
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| T |
13350011 |
ggatgatgtttgtgcctttatggctcactttctcttacacttttactgcttttagtatttgg |
13349950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 31605725 - 31605872
Alignment:
| Q |
20 |
taacagcagcaacaatggttgggcttcaaagcattcccgggcttgtcatactttacggaagcctagtgaagaaaacatgggctataaactcagctttcat |
119 |
Q |
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|||||||||||||| | || || ||||||| |||| |||||||| ||||| || || ||| | || ||||||| |||||| |||| || |||||||| |
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| T |
31605725 |
taacagcagcaacattagtaggccttcaaactgttcctgggcttgtaatactctatggcagcatggttaagaaaaaatgggccgtaaattcggctttcat |
31605824 |
T |
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| Q |
120 |
ggccttctatgcatttgcatccgttctcctttgttgggtttcatgggc |
167 |
Q |
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| T |
31605825 |
ggccctatatgcatttgctgctgtactagtttgttgggttttatgggc |
31605872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 533
Target Start/End: Original strand, 31606165 - 31606235
Alignment:
| Q |
463 |
attgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggt |
533 |
Q |
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||||||| ||| ||||| | ||| ||||| || ||| |||||||||| ||||| ||||||||||||||||| |
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| T |
31606165 |
attgattatgccggggggtttgtaattcatctatcttctggtgttgcaggtttcactgctgcttattgggt |
31606235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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