View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2238_high_3 (Length: 324)
Name: NF2238_high_3
Description: NF2238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2238_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 126 - 307
Target Start/End: Complemental strand, 3894285 - 3894104
Alignment:
| Q |
126 |
aaatttgtaactgttataaaactaattcatcaattgtcttatgccttttagatatttgttaatgaagatgagtgaagggtttgttgacacaccatgaagc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3894285 |
aaatttgtaactgttataaaactaattcatcaattgtcttatgccttttagatatttgttaatgaagatgagtgaagggtttgttgacacaccatgaagc |
3894186 |
T |
|
| Q |
226 |
aaaacaacccgcagttgaagaacaataatgctatatttgttaatgaaaatcatgttttatatgaaaaaagaagaagaaataa |
307 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3894185 |
aaaacaacccgcagttgaagaacaattatgctatatttgttaatgaaaatcatgttttatatgaaaaaagaagaagaaataa |
3894104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 3894758 - 3894705
Alignment:
| Q |
16 |
agagcatcttctcaaaaaa-taatattaagagaatcactgaaacaataaattat |
68 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
3894758 |
agagcatcttcttaaaaaaataatattgagagaatcacttaaacaataaattat |
3894705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 130 - 307
Target Start/End: Original strand, 42057984 - 42058161
Alignment:
| Q |
130 |
ttgtaactgttataaaactaattcatcaattgtcttatgccttttagatatttgttaatgaagatgagtgaagggtttgttgacacaccatgaagcaaaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42057984 |
ttgtaactgttataaaactaattcatcaattgtcttatgccttttagatatttgttaatgaagatgagtgaagggtttgttgacacaccatgaagcaaaa |
42058083 |
T |
|
| Q |
230 |
caacccgcagttgaagaacaataatgctatatttgttaatgaaaatcatgttttatatgaaaaaagaagaagaaataa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42058084 |
caacccgcagttgaagaacaataatgctatatttgttaatgaaaatcatgttttatatgaaaaaagaaggagaaataa |
42058161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 42062746 - 42062650
Alignment:
| Q |
159 |
ttgtcttatgccttttagatatttgttaatgaagatgagtgaagg----gtttgttgacacacc-atgaagcaaaacaacccgcagttgaagaacaa |
250 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
42062746 |
ttgttttatgtcttttagatatttgttaatgaagatgagtgaagtaagtgtttgttgacacacccatgaagcaaaacaactcgcagttgaagaacaa |
42062650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 42057660 - 42057712
Alignment:
| Q |
16 |
agagcatcttctcaaaaaataatattaagagaatcactgaaacaataaattat |
68 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42057660 |
agagcatcttctcaaaaaataatattgagagaatcactgaaacaataaattat |
42057712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 42057907 - 42057944
Alignment:
| Q |
86 |
aataatgatgcaacaatattgctacatcgatgattttt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42057907 |
aataatgatgcaacaatattgctacatcgatggttttt |
42057944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University