View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2238_high_6 (Length: 288)
Name: NF2238_high_6
Description: NF2238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2238_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 25 - 266
Target Start/End: Complemental strand, 35182744 - 35182503
Alignment:
| Q |
25 |
gaacctgtgagtgtgtgttggtttgaaatcaggggctggatcagcactatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcga |
124 |
Q |
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| T |
35182744 |
gaacttgtgagtgtgtgttggtttgaaatcaggggctggatcagcactatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcga |
35182645 |
T |
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| Q |
125 |
gtgctgctggagcctttggatttgaatatcagccatgtgaagcctccattgacattgctggaggcgatactgtggagcgaaatgtattcttggatgcggg |
224 |
Q |
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| T |
35182644 |
gtgctgctggagcctttggatttgaatatcagccatgtgaagcctccattgacattgctggaggcgatactgtggagcgaaatgtattcttggatgcggg |
35182545 |
T |
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| Q |
225 |
aagaggacgaaggctaagataccagattgttcctcgctcccg |
266 |
Q |
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| T |
35182544 |
aagaggacgaaggctaagataccagattgttcctcgctcccg |
35182503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 37 - 267
Target Start/End: Complemental strand, 35178763 - 35178533
Alignment:
| Q |
37 |
gtgtgttggtttgaaatcaggggctggatcagcactatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcgagtgctgctggag |
136 |
Q |
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| T |
35178763 |
gtgtgttggttcgaaatccggggctggatcaacacgatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcgagtgcttctggaa |
35178664 |
T |
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| Q |
137 |
cctttggatttgaatatcagccatgtgaagcctccattgacattgctggaggcgatactgtggagcgaaatgtattcttggatgcgggaagaggacgaag |
236 |
Q |
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| T |
35178663 |
cctatggatttgagtatcagccatgtgaagcctccattgtcattgctggaggtgatactgtggagcgaaatgtattcttggatgtggaaagaggacgaag |
35178564 |
T |
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| Q |
237 |
gctaagataccagattgttcctcgctcccgt |
267 |
Q |
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| T |
35178563 |
gctaagataccagattgttcatcgcttccgt |
35178533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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