View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2238_high_8 (Length: 237)
Name: NF2238_high_8
Description: NF2238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2238_high_8 |
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| [»] scaffold0341 (3 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 12146 - 11928
Alignment:
| Q |
1 |
tgcaaaaaacagtggcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatctttagaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12146 |
tgcaaaaaacagtggcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatgtttagaagt |
12047 |
T |
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| Q |
101 |
gaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12046 |
gaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcga |
11947 |
T |
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| Q |
201 |
tattaaacaatgattcacg |
219 |
Q |
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|||||||||||||||||| |
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| T |
11946 |
cattaaacaatgattcacg |
11928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 4399 - 4272
Alignment:
| Q |
92 |
tttagaagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatca |
191 |
Q |
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|||||||||| |||||||||||||| ||| | ||| ||||| ||| |||||||||| |||||||||||||||||| || ||||||||||||||||||| |
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| T |
4399 |
tttagaagtggaattatatctaacatagaatgatatatgcatctggataaatttgtgtaggcatggagaaattggagagaggggactgcaacaaatatca |
4300 |
T |
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| Q |
192 |
tagactcgatattaaacaatgattcacg |
219 |
Q |
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||||||||| |||||||||||||||||| |
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| T |
4299 |
tagactcgacattaaacaatgattcacg |
4272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 4517 - 4452
Alignment:
| Q |
5 |
aaaaacagtggcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcatactttt |
70 |
Q |
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| T |
4517 |
aaaaatagtagcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcataatttt |
4452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 6510466 - 6510248
Alignment:
| Q |
1 |
tgcaaaaaacagtggcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatctttagaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6510466 |
tgcaaaaaacagtggcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatgtttagaagt |
6510367 |
T |
|
| Q |
101 |
gaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| ||||||||| || | |
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| T |
6510366 |
gaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggattgatggtactgcaacaattatcatagattcta |
6510267 |
T |
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| Q |
201 |
tattaaacaatgattcacg |
219 |
Q |
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||||||||||||||||| |
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| T |
6510266 |
ctttaaacaatgattcacg |
6510248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 6502721 - 6502594
Alignment:
| Q |
92 |
tttagaagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatca |
191 |
Q |
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|||||||||| |||||||||||||| ||| | ||| ||||| ||| |||||||||| |||||||||||||||||| || ||||||||||||||||||| |
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| T |
6502721 |
tttagaagtggaattatatctaacatagaatgatatatgcatctggataaatttgtgtaggcatggagaaattggagagaggggactgcaacaaatatca |
6502622 |
T |
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| Q |
192 |
tagactcgatattaaacaatgattcacg |
219 |
Q |
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||||||||| |||||||||||||||||| |
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| T |
6502621 |
tagactcgacattaaacaatgattcacg |
6502594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 6497481 - 6497262
Alignment:
| Q |
3 |
caaaaaacagtggcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtc------atatctttcatctttag |
96 |
Q |
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||||||||||||||||||| |||| ||||||||| || ||||| || ||||||||||||||||||||| ||||| || |||| |||||| | || |
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| T |
6497481 |
caaaaaacagtggcattcgcgatgaggagaatactgagtatctatcgagctttgtaagtcatactttttatgtcatcgtcatcatatatttcatgt--ag |
6497384 |
T |
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| Q |
97 |
aagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagac |
196 |
Q |
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||||| | ||||||||||| || | ||||||| ||||| |||||||||||||||||||| ||||||||||| || |||||||||| ||||||||| |
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| T |
6497383 |
aagtgta-ttatatctaacctagtattttatttgcgtttggacaaatttgtgcaggcatggaggaattggaaggagggaactgcaacaagtatcatagat |
6497285 |
T |
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| Q |
197 |
tcgatattaaacaatgattcacg |
219 |
Q |
| |
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| | ||||||||||||||||| |
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| T |
6497284 |
cccacgttaaacaatgattcacg |
6497262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 6502838 - 6502773
Alignment:
| Q |
5 |
aaaaacagtggcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcatactttt |
70 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6502838 |
aaaaatagtagcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcataatttt |
6502773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 6514690 - 6514613
Alignment:
| Q |
141 |
aatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcac |
218 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| | | |||||||||||| |||| |
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| T |
6514690 |
aatttgtgtaggcatggagaaattggaaggaggggactgcagcaaatatcatagatccaacattaaacaatgactcac |
6514613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 6514863 - 6514779
Alignment:
| Q |
3 |
caaaaaacagtggcattcgtgatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatcttt |
87 |
Q |
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||||||| ||| ||| ||||||||||||||||| ||||||||||| |||||||||||||||| || ||||| |||||||||| |
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| T |
6514863 |
caaaaaatagttacatccgtgatggggagaatacggaatatctctcgagctttgtaagtcataattgtcatgcaatcatatcttt |
6514779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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